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    SCPL45 serine carboxypeptidase-like 45 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839704, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SCPL45
    Official Full Name
    serine carboxypeptidase-like 45
    Primary source
    TAIR:AT1G28110
    Locus tag
    AT1G28110
    See related
    Araport:AT1G28110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13K9.20; F13K9_20; serine carboxypeptidase-like 45
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    Genomic context

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    See SCPL45 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (9803641..9806899, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ubiquitin thioesterase otubain-like protein Neighboring gene Auxin-responsive GH3 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_102576.2
    NM_202197.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type carboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    serine carboxypeptidase-like 45
    NP_564298.1
    • serine carboxypeptidase-like 45 (SCPL45); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 46 (TAIR:AT2G33530.1); Has 3718 Blast hits to 3657 proteins in 439 species: Archae - 0; Bacteria - 354; Metazoa - 639; Fungi - 854; Plants - 1450; Viruses - 0; Other Eukaryotes - 421 (source: NCBI BLink).
    NP_973926.1
    • serine carboxypeptidase-like 45 (SCPL45); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 46 (TAIR:AT2G33530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9803641..9806899 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202197.2 → NP_973926.1  serine carboxypeptidase-like 45 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973926.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93Y09, Q9C7E2
      UniProtKB/TrEMBL
      A0A178WFT6, A0A5S9W5Q3, A0A654EDI6, A0A7G2DTI0
      Conserved Domains (1) summary
      pfam00450
      Location:36 → 454
      Peptidase_S10; Serine carboxypeptidase

    2. NM_102576.2 → NP_564298.1  serine carboxypeptidase-like 45 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564298.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93Y09, Q9C7E2
      UniProtKB/TrEMBL
      A0A178WFT6, A0A5S9W5Q3, A0A654EDI6, A0A7G2DTI0
      Conserved Domains (1) summary
      pfam00450
      Location:36 → 454
      Peptidase_S10; Serine carboxypeptidase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93Y09.1

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