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    ABCG29 pleiotropic drug resistance 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820881, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ABCG29
    Official Full Name
    pleiotropic drug resistance 1
    Primary source
    TAIR:AT3G16340
    Locus tag
    AT3G16340
    See related
    Araport:AT3G16340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtABCG29; ATP-binding cassette G29; ATPDR1; PDR1; pleiotropic drug resistance 1; PLEIOTROPIC DRUG RESISTANCE 1
    Summary
    Encodes a p-coumaryl alcohol exporter involved in lignin biosynthesis.
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    Genomic context

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    See ABCG29 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    19
    Sequence:
    Chromosome: 3; NC_003074.8 (5539385..5546487)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Avr9/Cf-9 rapidly elicited protein Neighboring gene Homeodomain-like superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nitrogen and phosphorus interaction and cytokinin: responses of the primary root of Arabidopsis thaliana and the pdr1 mutant. Cerutti T, et al. Plant Sci, 2013 Jan. PMID 23199690
    2. AtABCG29 is a monolignol transporter involved in lignin biosynthesis. Alejandro S, et al. Curr Biol, 2012 Jul 10. PMID 22704988
    3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtABCG29 is a monolignol transporter involved in lignin biosynthesis. [AtABCG29]
      Title: AtABCG29 is a monolignol transporter involved in lignin biosynthesis.
    2. high N induced cell division as well as increased the expression of AtPT1 and AtACP5 even at high P availability.
      Title: Nitrogen and phosphorus interaction and cytokinin: responses of the primary root of Arabidopsis thaliana and the pdr1 mutant.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001202982.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATPase-coupled transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within organic hydroxy compound transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within p-coumaryl alcohol transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of lignin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pleiotropic drug resistance 1
    NP_001189911.1
    • pleiotropic drug resistance 1 (PDR1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), Pleiotropic drug resistance protein PDR (InterPro:IPR005285), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1).
    NP_566543.1
    • pleiotropic drug resistance 1 (PDR1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: drug transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), Pleiotropic drug resistance protein PDR (InterPro:IPR005285), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1); Has 382062 Blast hits to 287791 proteins in 4008 species: Archae - 7336; Bacteria - 307356; Metazoa - 10132; Fungi - 7268; Plants - 6380; Viruses - 4; Other Eukaryotes - 43586 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5539385..5546487
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112505.4 → NP_566543.1  pleiotropic drug resistance 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566543.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04323, Q94A18
      UniProtKB/TrEMBL
      A0A178VDK2
      Conserved Domains (6) summary
      cd03232
      Location:811 → 1049
      ABCG_PDR_domain2; Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters
      cd03233
      Location:156 → 402
      ABCG_PDR_domain1; First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters
      PLN03140
      Location:1 → 1416
      PLN03140; ABC transporter G family member; Provisional
      pfam01061
      Location:1144 → 1351
      ABC2_membrane; ABC-2 type transporter
      pfam08370
      Location:716 → 780
      PDR_assoc; Plant PDR ABC transporter associated
      pfam14510
      Location:54 → 141
      ABC_trans_N; ABC-transporter extracellular N-terminal

    2. NM_001202982.2 → NP_001189911.1  pleiotropic drug resistance 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189911.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VDK2, F4J1I6
      Conserved Domains (6) summary
      cd03232
      Location:806 → 1044
      ABCG_PDR_domain2; Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters
      PLN03140
      Location:1 → 1411
      PLN03140; ABC transporter G family member; Provisional
      pfam01061
      Location:1139 → 1346
      ABC2_membrane; ABC-2 type transporter
      pfam08370
      Location:711 → 775
      PDR_assoc; Plant PDR ABC transporter associated
      pfam14510
      Location:54 → 141
      ABC_trans_N; ABC-transporter extracellular N-terminal
      cl21455
      Location:156 → 397
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94A18.2

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