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    lysine-tRNA ligase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821278, updated on 18-Sep-2024

    Summary

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    Official Full Name
    lysine-tRNA ligase
    Primary source
    TAIR:AT3G01060
    Locus tag
    AT3G01060
    See related
    Araport:AT3G01060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T4P13.26; T4P13_26
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (16631..18909, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene membrane-anchored ubiquitin-fold protein 1 precursor Neighboring gene ncRNA Neighboring gene early nodulin-like protein 16 Neighboring gene WRKY DNA-binding protein 58

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis. Li G, et al. Nat Cell Biol, 2011 May. PMID 21499259
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_110971.4
    NM_202471.2
    NM_202472.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within circadian rhythm IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    lysine-tRNA ligase
    NP_566129.1
    • unknown protein; Has 640 Blast hits to 638 proteins in 201 species: Archae - 0; Bacteria - 293; Metazoa - 0; Fungi - 71; Plants - 72; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
    NP_974200.2
    • unknown protein; Has 637 Blast hits to 635 proteins in 201 species: Archae - 0; Bacteria - 291; Metazoa - 0; Fungi - 72; Plants - 72; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).
    NP_974201.1
    • unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16631..18909 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_110971.4 → NP_566129.1  lysine-tRNA ligase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566129.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7S8, A0A384LK34, Q8LAR6, Q8RWI4
      Conserved Domains (1) summary
      pfam14234
      Location:101 → 394
      DUF4336; Domain of unknown function (DUF4336)

    2. NM_202472.1 → NP_974201.1  lysine-tRNA ligase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974201.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IYD7
      Conserved Domains (1) summary
      pfam14234
      Location:101 → 355
      DUF4336; Domain of unknown function (DUF4336)

    3. NM_202471.2 → NP_974200.2  lysine-tRNA ligase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974200.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IYD5, Q8LAR6
      Conserved Domains (1) summary
      pfam14234
      Location:101 → 386
      DUF4336; Domain of unknown function (DUF4336)
    Nucleotide Protein
    Heading Accession and Version

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