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    transcriptional activator (DUF662) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831768, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcriptional activator (DUF662)
    Primary source
    TAIR:AT5G03660
    Locus tag
    AT5G03660
    See related
    Araport:AT5G03660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17C15.80; F17C15_80
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (937817..940115)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene starch branching enzyme 2.2 Neighboring gene ncRNA Neighboring gene histone-lysine N-methyltransferase SETD1B-like protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001203289.1
    NM_120447.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    transcriptional activator (DUF662)
    NP_001190218.1
    • Family of unknown function (DUF662); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT3G09980.1).
    NP_568126.1
    • Family of unknown function (DUF662); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT3G09980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      937817..940115
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342724.1 → NP_001331245.1  transcriptional activator (DUF662) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDB2, Q9LZS2

    2. NM_120447.3 → NP_568126.1  transcriptional activator (DUF662) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568126.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UAK5, Q940P0, Q9LZS2
      Conserved Domains (1) summary
      pfam04949
      Location:21 → 169
      Transcrip_act; Transcriptional activator

    3. NM_001203289.1 → NP_001190218.1  transcriptional activator (DUF662) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190218.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KGP6, Q9LZS2
      Conserved Domains (1) summary
      pfam04949
      Location:21 → 147
      Transcrip_act; Transcriptional activator
    Nucleotide Protein
    Heading Accession and Version

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