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    KDTA KDO transferase A [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831727, updated on 18-Sep-2024

    Summary

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    Official Symbol
    KDTA
    Official Full Name
    KDO transferase A
    Primary source
    TAIR:AT5G03770
    Locus tag
    AT5G03770
    See related
    Araport:AT5G03770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtKdtA; F17C15.190; F17C15_190; KDO transferase A
    Summary
    Encodes a putative KDO (3-deoxy-D-manno-octulosonate) transferase
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    Genomic context

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    See KDTA in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (995095..997849)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene tRNA-Arg Neighboring gene TRF-like 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of a putative 3-deoxy-D-manno-2-octulosonic acid (Kdo) transferase gene from Arabidopsis thaliana. Séveno M, et al. Glycobiology, 2010 May. PMID 20124190
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_001342730.1
    NM_120458.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables Kdo transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in Kdo2-lipid A biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    KDO transferase A
    NP_195997.2
    • KDO transferase A (KDTA); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, carbohydrate metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal (InterPro:IPR007507); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      995095..997849
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342729.1 → NP_001331079.1  KDO transferase A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCS9
      Conserved Domains (1) summary
      PRK05749
      Location:9 → 321
      PRK05749; 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed

    2. NM_120458.3 → NP_195997.2  KDO transferase A [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195997.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZA5, Q9FFN3, Q9LZR2
      UniProtKB/TrEMBL
      A0A178UTI4, A0A384KX57, A0A7G2F5C9, W8QNB9
      Conserved Domains (1) summary
      PRK05749
      Location:9 → 415
      PRK05749; 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed

    3. NM_001342730.1 → NP_001331078.1  KDO transferase A [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCT3, A0A7G2F5C9
      Conserved Domains (1) summary
      PRK05749
      Location:1 → 348
      PRK05749; 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VZA5.1

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