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    trichohyalin, putative (DUF3444) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819656, updated on 18-Sep-2024

    Summary

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    Official Full Name
    trichohyalin, putative (DUF3444)
    Primary source
    TAIR:AT3G04960
    Locus tag
    AT3G04960
    See related
    Araport:AT3G04960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9J14.9; T9J14_9
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (1373688..1375989)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene low-molecular-weight cysteine-rich 18 Neighboring gene SEC-C motif protein Neighboring gene DHHC-type zinc finger family protein Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene ncRNA Neighboring gene intracellular protein transporter

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084639.1
    NM_001084640.2
    NM_001202881.1
    NM_111368.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    trichohyalin, putative (DUF3444)
    NP_001078108.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT4G27980.1); Has 20945 Blast hits to 14757 proteins in 1130 species: Archae - 326; Bacteria - 2117; Metazoa - 9449; Fungi - 1430; Plants - 1214; Viruses - 36; Other Eukaryotes - 6373 (source: NCBI BLink).
    NP_001078109.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT4G27980.1); Has 33111 Blast hits to 21453 proteins in 1461 species: Archae - 544; Bacteria - 3468; Metazoa - 15851; Fungi - 2267; Plants - 1766; Viruses - 45; Other Eukaryotes - 9170 (source: NCBI BLink).
    NP_001189810.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT4G27980.1).
    NP_187147.2
    • CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT4G27980.1); Has 31210 Blast hits to 20329 proteins in 1398 species: Archae - 511; Bacteria - 3238; Metazoa - 14770; Fungi - 2177; Plants - 1702; Viruses - 48; Other Eukaryotes - 8764 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1373688..1375989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084640.2 → NP_001078109.1  trichohyalin, putative (DUF3444) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078109.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCU8, A0A384LDH9, F4J631, Q9CAW0
      Conserved Domains (2) summary
      TIGR02168
      Location:31 → 334
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam11926
      Location:371 → 567
      DUF3444; Domain of unknown function (DUF3444)

    2. NM_001202881.1 → NP_001189810.1  trichohyalin, putative (DUF3444) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189810.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J632, Q9CAW0
      Conserved Domains (1) summary
      pfam11926
      Location:321 → 515
      DUF3444; Domain of unknown function (DUF3444)

    3. NM_111368.3 → NP_187147.2  trichohyalin, putative (DUF3444) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187147.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F488, A8MR58
      Conserved Domains (1) summary
      pfam11926
      Location:324 → 518
      DUF3444; Domain of unknown function (DUF3444)

    4. NM_001084639.1 → NP_001078108.1  trichohyalin, putative (DUF3444) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078108.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654F488, A8MQS7
      Conserved Domains (1) summary
      pfam11926
      Location:272 → 466
      DUF3444; Domain of unknown function (DUF3444)
    Nucleotide Protein
    Heading Accession and Version

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