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    emb1974 NHL domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819892, updated on 18-Sep-2024

    Summary

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    Official Symbol
    emb1974
    Official Full Name
    NHL domain-containing protein
    Primary source
    TAIR:AT3G07060
    Locus tag
    AT3G07060
    See related
    Araport:AT3G07060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo defective 1974
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    Genomic context

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    See emb1974 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    17
    Sequence:
    Chromosome: 3; NC_003074.8 (2232534..2237141)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Alba DNA/RNA-binding protein Neighboring gene NB-ARC domain-containing disease resistance protein Neighboring gene GTP-binding family protein Neighboring gene tRNA-Met Neighboring gene Protein kinase superfamily protein Neighboring gene EamA-like transporter family Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_111586.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy NAS
    Non-traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    NHL domain-containing protein
    NP_187362.3
    • embryo defective 1974 (emb1974); CONTAINS InterPro DOMAIN/s: Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G56500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2232534..2237141
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111586.4 → NP_187362.3  NHL domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187362.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V6X2, F4JD91
      Conserved Domains (2) summary
      cd05819
      Location:272 → 309
      NHL; NHL repeat [structural motif]
      cl18310
      Location:264 → 361
      NHL; NHL repeat unit of beta-propeller proteins
    Nucleotide Protein
    Heading Accession and Version

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