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    fiber (DUF1218) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820787, updated on 18-Sep-2024

    Summary

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    Official Full Name
    fiber (DUF1218)
    Primary source
    TAIR:AT3G15480
    Locus tag
    AT3G15480
    See related
    Araport:AT3G15480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (5226161..5227935, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene aluminum induced protein with YGL and LRDR motifs Neighboring gene Ribosomal RNA processing Brix domain protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene Regulator of Vps4 activity in the MVB pathway protein Neighboring gene NAC domain containing protein 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TRANVIA (TVA) facilitates cellulose synthase trafficking and delivery to the plasma membrane. Vellosillo T, et al. Proc Natl Acad Sci U S A, 2021 Jul 27. PMID 34290139, Free PMC Article
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_112416.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellulose biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within vesicle-mediated transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 
    located_in secretory vesicle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in trans-Golgi network IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fiber (DUF1218)
    NP_566516.1
    • Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT1G52910.1); Has 522 Blast hits to 522 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 522; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5226161..5227935 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112416.4 → NP_566516.1  fiber (DUF1218) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566516.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VA63, A0A384KNR2, A0A5S9XCD2, A0A654F7G3, Q9LDK1
      Conserved Domains (1) summary
      pfam06749
      Location:58 → 154
      DUF1218; Protein of unknown function (DUF1218)
    Nucleotide Protein
    Heading Accession and Version

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