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    Ribosomal protein L30/L7 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820560, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein L30/L7 family protein
    Primary source
    TAIR:AT3G13580
    Locus tag
    AT3G13580
    See related
    Araport:AT3G13580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (4433047..4435305)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene SC35-like splicing factor 30A Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene calmodulin-binding family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular evolutionary analyses of the Arabidopsis L7 ribosomal protein gene family. Barakat A, et al. Gene, 2007 Nov 15. PMID 17889453
    2. Identification of proteins that interact with catalytically active calcium-dependent protein kinases from Arabidopsis. Uno Y, et al. Mol Genet Genomics, 2009 Apr. PMID 19130088
    3. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    4. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    5. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The expression of RPL7D in Arabidopsis is reported.
      Title: Molecular evolutionary analyses of the Arabidopsis L7 ribosomal protein gene family.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001338057.1
    NM_001338058.1
    NM_001338059.1
    NM_001338060.1
    NM_001338061.1
    NM_001338062.1
    NM_112204.3
    NM_202575.1
    NM_202576.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein L30/L7 family protein
    NP_187967.1
    • Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, chloroplast, large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT2G01250.1); Has 1325 Blast hits to 1323 proteins in 391 species: Archae - 211; Bacteria - 1; Metazoa - 476; Fungi - 215; Plants - 195; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).
    NP_974304.1
    • Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT2G01250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974305.1
    • Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT2G01250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4433047..4435305
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112204.3 → NP_187967.1  Ribosomal protein L30/L7 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187967.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LHP1
      UniProtKB/TrEMBL
      A0A178VHA2, A0A5S9XBS9
      Conserved Domains (1) summary
      TIGR01310
      Location:12 → 244
      uL30_euk; 60S ribosomal protein uL30, eukaryotic form

    2. NM_202575.1 → NP_974304.1  Ribosomal protein L30/L7 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974304.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LHP1
      UniProtKB/TrEMBL
      A0A178VHA2, A0A5S9XBS9
      Conserved Domains (1) summary
      TIGR01310
      Location:12 → 244
      uL30_euk; 60S ribosomal protein uL30, eukaryotic form

    3. NM_202576.2 → NP_974305.1  Ribosomal protein L30/L7 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974305.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LHP1
      UniProtKB/TrEMBL
      A0A178VHA2, A0A5S9XBS9
      Conserved Domains (1) summary
      TIGR01310
      Location:12 → 244
      uL30_euk; 60S ribosomal protein uL30, eukaryotic form

    4. NM_001338059.1 → NP_001326489.1  Ribosomal protein L30/L7 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LHP1
      UniProtKB/TrEMBL
      A0A178VHA2, A0A5S9XBS9
      Conserved Domains (1) summary
      TIGR01310
      Location:12 → 244
      uL30_euk; 60S ribosomal protein uL30, eukaryotic form

    5. NM_001338057.1 → NP_001326491.1  Ribosomal protein L30/L7 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LHP1
      UniProtKB/TrEMBL
      A0A178VHA2, A0A5S9XBS9
      Conserved Domains (1) summary
      TIGR01310
      Location:12 → 244
      uL30_euk; 60S ribosomal protein uL30, eukaryotic form

    6. NM_001338060.1 → NP_001326488.1  Ribosomal protein L30/L7 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LHP1
      UniProtKB/TrEMBL
      A0A178VHA2, A0A5S9XBS9
      Conserved Domains (1) summary
      TIGR01310
      Location:12 → 244
      uL30_euk; 60S ribosomal protein uL30, eukaryotic form

    7. NM_001338061.1 → NP_001326487.1  Ribosomal protein L30/L7 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LHP1
      UniProtKB/TrEMBL
      A0A178VHA2, A0A5S9XBS9
      Conserved Domains (1) summary
      TIGR01310
      Location:12 → 244
      uL30_euk; 60S ribosomal protein uL30, eukaryotic form

    8. NM_001338062.1 → NP_001326486.1  Ribosomal protein L30/L7 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LHP1
      UniProtKB/TrEMBL
      A0A178VHA2, A0A5S9XBS9
      Conserved Domains (1) summary
      TIGR01310
      Location:12 → 244
      uL30_euk; 60S ribosomal protein uL30, eukaryotic form

    9. NM_001338058.1 → NP_001326490.1  Ribosomal protein L30/L7 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LHP1
      UniProtKB/TrEMBL
      A0A178VHA2, A0A5S9XBS9
      Conserved Domains (1) summary
      TIGR01310
      Location:12 → 244
      uL30_euk; 60S ribosomal protein uL30, eukaryotic form
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LHP1.1

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