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    DNA glycosylase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843860, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA glycosylase superfamily protein
    Primary source
    TAIR:AT1G75230
    Locus tag
    AT1G75230
    See related
    Araport:AT1G75230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22H5.5; F22H5_5
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (28234086..28237290)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene flavodoxin family protein / radical SAM domain-containing protein Neighboring gene HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase Neighboring gene Major facilitator superfamily protein Neighboring gene homeobox protein 33 Neighboring gene RAD-like 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_106179.4
    NM_202418.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in base-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA glycosylase superfamily protein
    NP_565105.1
    • DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G19480.1); Has 4607 Blast hits to 4603 proteins in 1094 species: Archae - 60; Bacteria - 2345; Metazoa - 15; Fungi - 147; Plants - 87; Viruses - 0; Other Eukaryotes - 1953 (source: NCBI BLink).
    NP_974147.1
    • DNA glycosylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G19480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28234086..28237290
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202418.2 → NP_974147.1  DNA glycosylase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974147.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN76, A0A5S9WUJ2, F4HXH4
      Conserved Domains (2) summary
      COG0122
      Location:134 → 328
      AlkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Replication, recombination and repair]
      pfam00730
      Location:172 → 317
      HhH-GPD; HhH-GPD superfamily base excision DNA repair protein

    2. NM_106179.4 → NP_565105.1  DNA glycosylase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565105.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WQ71, Q9C5J2
      Conserved Domains (2) summary
      COG0122
      Location:134 → 328
      AlkA; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [Replication, recombination and repair]
      pfam00730
      Location:172 → 317
      HhH-GPD; HhH-GPD superfamily base excision DNA repair protein
    Nucleotide Protein
    Heading Accession and Version

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