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    SAC3B SAC3/GANP/Nin1/mts3/eIF-3 p25 family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819803, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SAC3B
    Official Full Name
    SAC3/GANP/Nin1/mts3/eIF-3 p25 family
    Primary source
    TAIR:AT3G06290
    Locus tag
    AT3G06290
    See related
    Araport:AT3G06290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSAC3B; F28L1.23; F28L1_23; yeast Sac3 homolog B
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    Genomic context

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    See SAC3B in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    19
    Sequence:
    Chromosome: 3; NC_003074.8 (1898877..1907448, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2C family protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene P4H isoform 2 Neighboring gene miscRNA Neighboring gene Cox19-like CHCH family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SAC3B, a central component of the mRNA export complex TREX-2, is required for prevention of epigenetic gene silencing in Arabidopsis. Yang Y, et al. Nucleic Acids Res, 2017 Jan 9. PMID 27672037, Free PMC Article
    2. SAC3B is a target of CML19, the centrin 2 of Arabidopsis thaliana. Pedretti M, et al. Biochem J, 2020 Jan 17. PMID 31860002
    3. Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin. Lu Q, et al. Plant J, 2010 Jan. PMID 19843313
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001337645.1
    NM_001337646.1
    NM_111504.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nuclear periphery IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SAC3/GANP/Nin1/mts3/eIF-3 p25 family
    NP_187280.3
    • SAC3/GANP/Nin1/mts3/eIF-3 p25 family; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: SAC3/GANP/Nin1/mts3/eIF-3 p25 family (TAIR:AT3G54380.1); Has 1557 Blast hits to 1047 proteins in 222 species: Archae - 0; Bacteria - 35; Metazoa - 487; Fungi - 321; Plants - 148; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1898877..1907448 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337644.1 → NP_001327777.1  SAC3/GANP/Nin1/mts3/eIF-3 p25 family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTD0, A0A5S9X9M6
      Conserved Domains (4) summary
      PHA03247
      Location:12 → 359
      PHA03247; large tegument protein UL36; Provisional
      pfam09606
      Location:35 → 178
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam03399
      Location:465 → 763
      SAC3_GANP; SAC3/GANP family
      pfam16769
      Location:1101 → 1452
      MCM3AP_GANP; MCM3AP domain of GANP

    2. NM_111504.3 → NP_187280.3  SAC3/GANP/Nin1/mts3/eIF-3 p25 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187280.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JAU2, Q9M8I9
      UniProtKB/TrEMBL
      A0A654F698
      Conserved Domains (3) summary
      COG5079
      Location:444 → 927
      SAC3; Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]
      pfam03399
      Location:536 → 763
      SAC3_GANP; SAC3/GANP/Nin1/mts3/eIF-3 p25 family
      pfam16769
      Location:1119 → 1458
      MCM3AP_GANP; MCM3AP domain of GANP

    3. NM_001337645.1 → NP_001327776.1  SAC3/GANP/Nin1/mts3/eIF-3 p25 family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7S6, A0A178V9D9, A0A1I9LTC9, A0A384KH48

    4. NM_001337646.1 → NP_001327778.1  SAC3/GANP/Nin1/mts3/eIF-3 p25 family [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V9D9, A0A1I9LTD1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JAU2.1

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