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    ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820433, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547)
    Primary source
    TAIR:AT3G12540
    Locus tag
    AT3G12540
    See related
    Araport:AT3G12540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (3974802..3977369)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene sulfate transporter 4;2 Neighboring gene ncRNA Neighboring gene PSF2 Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene XH/XS domain-containing protein Neighboring gene TRF-like 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547)
    NP_001319532.1
    • Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT2G39690.1); Has 544 Blast hits to 542 proteins in 72 species: Archae - 7; Bacteria - 26; Metazoa - 31; Fungi - 0; Plants - 446; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3974802..3977369
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337997.1 → NP_001319532.1  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VID9, A0A384KEM9, F4J9T1, Q9C7A9, Q9LHB3
      Conserved Domains (2) summary
      pfam04784
      Location:365 → 488
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:57 → 136
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

    2. NM_112089.4 → NP_187860.3  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187860.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LSR6, Q9C7A9
      Conserved Domains (2) summary
      pfam04784
      Location:293 → 421
      DUF547; Protein of unknown function, DUF547
      pfam14389
      Location:1 → 71
      Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1
    Nucleotide Protein
    Heading Accession and Version

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