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    F-box/RNI-like/FBD-like domains-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838265, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/RNI-like/FBD-like domains-containing protein
    Primary source
    TAIR:AT1G16940
    Locus tag
    AT1G16940
    See related
    Araport:AT1G16940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17F16.21
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (5791983..5793491)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene RAB GTPase homolog A1B Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene F-box/FBD/LRR protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    F-box/RNI-like/FBD-like domains-containing protein
    NP_173138.1
    • F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G78750.1); Has 1457 Blast hits to 1436 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 0; Plants - 1429; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5791983..5793491
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101555.1 → NP_173138.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173138.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FZ53
      UniProtKB/TrEMBL
      A0A178WH36, A0A654EBJ6
      Conserved Domains (3) summary
      smart00579
      Location:345 → 414
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:134 → 155
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:12 → 51
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FZ53.1

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