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    RKF1 receptor-like kinase in flowers 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839853, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RKF1
    Official Full Name
    receptor-like kinase in flowers 1
    Primary source
    TAIR:AT1G29750
    Locus tag
    AT1G29750
    See related
    Araport:AT1G29750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1N18.19; F1N18_19; receptor-like kinase in flowers 1; RECEPTOR-LIKE SERINE/THREONINE KINASE
    Summary
    Receptor-like serine/threonine kinase (RKF1). The putative extracellular domain of the RKF1 protein contains 13 tandem repeats of leucine-rich sequences. Expressed in early flower primordial, stamen, and pollen grains.
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    Genomic context

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    See RKF1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    24
    Sequence:
    Chromosome: 1; NC_003070.9 (10413853..10420774, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene Leucine-rich repeat transmembrane protein kinase Neighboring gene Putative adipose-regulatory protein (Seipin) Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification by PCR of receptor-like protein kinases from Arabidopsis flowers. Takahashi T, et al. Plant Mol Biol, 1998 Jul. PMID 9687063
    2. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001332873.1
    NM_102715.8
    NM_180624.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    receptor-like kinase in flowers 1
    NP_174268.7
    • receptor-like kinase in flowers 1 (RKF1); FUNCTIONS IN: protein serine/threonine kinase activity, receptor signaling protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT3G14840.2); Has 173330 Blast hits to 127712 proteins in 4547 species: Archae - 123; Bacteria - 16375; Metazoa - 48014; Fungi - 10256; Plants - 77963; Viruses - 389; Other Eukaryotes - 20210 (source: NCBI BLink).
    NP_850955.5
    • receptor-like kinase in flowers 1 (RKF1); FUNCTIONS IN: protein serine/threonine kinase activity, receptor signaling protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT3G14840.2); Has 173202 Blast hits to 127607 proteins in 4540 species: Archae - 123; Bacteria - 16384; Metazoa - 47938; Fungi - 10258; Plants - 77889; Viruses - 389; Other Eukaryotes - 20221 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10413853..10420774 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180624.6 → NP_850955.5  receptor-like kinase in flowers 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850955.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6G1
      Conserved Domains (5) summary
      smart00221
      Location:671 → 937
      STYKc; Protein kinase; unclassified specificity
      COG4886
      Location:97 → 380
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14066
      Location:672 → 940
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:110 → 132
      LRR_RI; leucine-rich repeat [structural motif]
      pfam11721
      Location:402 → 589
      Malectin; Di-glucose binding within endoplasmic reticulum

    2. NM_001332873.1 → NP_001322311.1  receptor-like kinase in flowers 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4R0, A0A1P8ATN8

    3. NM_102715.8 → NP_174268.7  receptor-like kinase in flowers 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174268.7

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22579, Q8RWZ9, Q9C6G6, Q9FXF2
      UniProtKB/TrEMBL
      A0A178W4R0
      Conserved Domains (5) summary
      smart00221
      Location:686 → 952
      STYKc; Protein kinase; unclassified specificity
      COG4886
      Location:112 → 395
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14066
      Location:687 → 955
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      sd00033
      Location:125 → 147
      LRR_RI; leucine-rich repeat [structural motif]
      pfam11721
      Location:417 → 604
      Malectin; Di-glucose binding within endoplasmic reticulum
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FXF2.1

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