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    RPF1 RNA processing FACTOR [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837825, updated on 18-Sep-2024

    Summary

    Official Symbol
    RPF1
    Official Full Name
    RNA processing FACTOR
    Primary source
    TAIR:AT1G12700
    Locus tag
    AT1G12700
    See related
    Araport:AT1G12700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RNA processing factor 1; T12C24.31; T12C24_31
    Summary
    Encodes RNA PROCESSING FACTOR 1 (RPF1), a pentatricopeptide repeat (PPR) protein of the P-class containing canonical PPR-repeats. RPF1 is required for the 5#Aeo-end processing of the nad4 mRNA in mitochondria. Ler and other accessions impaired in processing of the nad4 mRNA 5'-end, contain a single nucleotide polymorphism (SNP) 807 nucleotides downstream of the predicted translation start codon (G807A). The resulting premature translation termination codon abolishes the function of the RPF1 gene in Ler.
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    Genomic context

    See RPF1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (4323533..4326377, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene thionin-like protein Neighboring gene phosphoenolpyruvate carboxylase-related kinase 2 Neighboring gene phloem protein 2-A12 Neighboring gene pseudo

    General gene information

    NM_001332041.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast  
    located_in mitochondrion PubMed 
    located_in mitochondrion  

    General protein information

    Preferred Names
    RNA processing FACTOR
    NP_001318989.1
    • ATP binding;nucleic acid binding;helicases; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), DNA/RNA helicase, C-terminal (InterPro:IPR001650); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 84744 Blast hits to 32036 proteins in 2584 species: Archae - 123; Bacteria - 11324; Metazoa - 2691; Fungi - 2451; Plants - 63733; Viruses - 4; Other Eukaryotes - 4418 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4323533..4326377 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332042.1 → NP_001320720.1  RNA processing FACTOR [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANP1
    2. NM_001332043.1 → NP_001320721.1  RNA processing FACTOR [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANP1
    3. NM_001332041.1 → NP_001318989.1  RNA processing FACTOR [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IDV5, P0C7Q7
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