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    hypothetical protein (DUF789) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838361, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF789)
    Primary source
    TAIR:AT1G17830
    Locus tag
    AT1G17830
    See related
    Araport:AT1G17830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2H15.6; F2H15_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (6135751..6138500, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene early nodulin-like protein 22 Neighboring gene beta-tonoplast intrinsic protein Neighboring gene ncRNA Neighboring gene testis-expressed sequence 2-like protein (DUF2404) Neighboring gene ncRNA Neighboring gene white-brown complex-like protein Neighboring gene Rhodanese/Cell cycle control phosphatase superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_101646.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF789)
    NP_564038.1
    • Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT1G73210.1); Has 265 Blast hits to 257 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6135751..6138500 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101646.3 → NP_564038.1  hypothetical protein (DUF789) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564038.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8LAM8, Q9LMU5
      Conserved Domains (1) summary
      pfam05623
      Location:18 → 331
      DUF789; Protein of unknown function (DUF789)
    Nucleotide Protein
    Heading Accession and Version

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