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    Threonyl-tRNA synthetase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838375, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Threonyl-tRNA synthetase
    Primary source
    TAIR:AT1G17960
    Locus tag
    AT1G17960
    See related
    Araport:AT1G17960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2H15.18; F2H15_18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (6180865..6183806, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Endosomal targeting BRO1-like domain-containing protein Neighboring gene myb domain protein 52 Neighboring gene RING/U-box superfamily protein Neighboring gene poly(A) polymerase 1 Neighboring gene FMN-linked oxidoreductases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. NOF1 encodes an Arabidopsis protein involved in the control of rRNA expression. Harscoët E, et al. PLoS One, 2010 Sep 20. PMID 20877469, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. NOF1(AT1G17960)is involved in the control of rRNA expression.
      Title: NOF1 encodes an Arabidopsis protein involved in the control of rRNA expression.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001332331.1
    NM_101659.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables threonine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in threonyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Threonyl-tRNA synthetase
    NP_173238.1
    • Threonyl-tRNA synthetase; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, threonine-tRNA ligase activity, ATP binding; INVOLVED IN: threonyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: inflorescence meristem, root, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158); BEST Arabidopsis thaliana protein match is: Threonyl-tRNA synthetase (TAIR:AT5G26830.1); Has 16132 Blast hits to 11197 proteins in 2892 species: Archae - 329; Bacteria - 9775; Metazoa - 548; Fungi - 378; Plants - 140; Viruses - 0; Other Eukaryotes - 4962 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6180865..6183806 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101659.3 → NP_173238.1  Threonyl-tRNA synthetase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173238.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GZ45, Q9LMT4
      UniProtKB/TrEMBL
      A0A5S9UY58, A0A654ELL3, A0A7G2DU28
      Conserved Domains (1) summary
      PLN02908
      Location:6 → 457
      PLN02908; threonyl-tRNA synthetase

    2. NM_001332331.1 → NP_001323038.1  Threonyl-tRNA synthetase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVU9, A0A7G2DU28
      Conserved Domains (1) summary
      PLN02908
      Location:92 → 384
      PLN02908; threonyl-tRNA synthetase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GZ45.2

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