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    U3 ribonucleoprotein (Utp) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828039, updated on 18-Sep-2024

    Summary

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    Official Full Name
    U3 ribonucleoprotein (Utp) family protein
    Primary source
    TAIR:AT4G02400
    Locus tag
    AT4G02400
    See related
    Araport:AT4G02400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T14P8.20; T14P8_20
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    11
    Sequence:
    Chromosome: 4; NC_003075.7 (1054199..1057998)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene senescence-associated gene 21 Neighboring gene microRNA ath-MIR2936 precursor Neighboring gene poly(ADP-ribose) polymerase Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Concanavalin A-like lectin protein kinase family protein Neighboring gene Concanavalin A-like lectin protein kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_116473.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    U3 ribonucleoprotein (Utp) family protein
    NP_567232.3
    • U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.2); Has 7468 Blast hits to 4514 proteins in 366 species: Archae - 14; Bacteria - 554; Metazoa - 2650; Fungi - 816; Plants - 392; Viruses - 146; Other Eukaryotes - 2896 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1054199..1057998
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116473.3 → NP_567232.3  U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567232.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XQ21, A0A654FL70, F4JHI1, Q0WLH1
      Conserved Domains (1) summary
      pfam04615
      Location:99 → 811
      Utp14; Utp14 protein
    Nucleotide Protein
    Heading Accession and Version

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