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    malonyl-CoA decarboxylase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825752, updated on 18-Sep-2024

    Summary

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    Official Full Name
    malonyl-CoA decarboxylase family protein
    Primary source
    TAIR:AT4G04320
    Locus tag
    AT4G04320
    See related
    Araport:AT4G04320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T19B17.4; T19B17_4
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    15
    Sequence:
    Chromosome: 4; NC_003075.7 (2113341..2116693)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene Chaperonin-like RbcX protein Neighboring gene ERD (early-responsive to dehydration stress) family protein Neighboring gene tRNA synthetase class I (I, L, M and V) family protein Neighboring gene transmembrane protein, putative (DUF1068)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis J-protein J20 delivers the first enzyme of the plastidial isoprenoid pathway to protein quality control. Pulido P, et al. Plant Cell, 2013 Oct. PMID 24104567, Free PMC Article
    2. In-depth proteome analysis of Arabidopsis leaf peroxisomes combined with in vivo subcellular targeting verification indicates novel metabolic and regulatory functions of peroxisomes. Reumann S, et al. Plant Physiol, 2009 May. PMID 19329564, Free PMC Article
    3. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_116670.5
    NM_202782.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables malonyl-CoA decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    malonyl-CoA decarboxylase family protein
    NP_192341.2
    • malonyl-CoA decarboxylase family protein; FUNCTIONS IN: malonyl-CoA decarboxylase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malonyl-CoA decarboxylase (InterPro:IPR007956); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974511.1
    • malonyl-CoA decarboxylase family protein; FUNCTIONS IN: malonyl-CoA decarboxylase activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malonyl-CoA decarboxylase (InterPro:IPR007956); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      2113341..2116693
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116670.5 → NP_192341.2  malonyl-CoA decarboxylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192341.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UST6, A0A654FMC0, A0A7G2EVA3, Q66GJ2, Q7Y1Z8
      Conserved Domains (2) summary
      pfam05292
      Location:211 → 491
      MCD; Malonyl-CoA decarboxylase C-terminal domain
      pfam17408
      Location:107 → 205
      MCD_N; Malonyl-CoA decarboxylase N-terminal domain

    2. NM_202782.2 → NP_974511.1  malonyl-CoA decarboxylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974511.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EV50, F4JGB9
      Conserved Domains (1) summary
      pfam05292
      Location:105 → 489
      MCD; Malonyl-CoA decarboxylase (MCD)
    Nucleotide Protein
    Heading Accession and Version

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