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    ATSPS4F Sucrose-phosphate synthase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826603, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATSPS4F
    Official Full Name
    Sucrose-phosphate synthase family protein
    Primary source
    TAIR:AT4G10120
    Locus tag
    AT4G10120
    See related
    Araport:AT4G10120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28M11.40; F28M11_40
    Summary
    Encodes a protein with putative sucrose-phosphate synthase activity.
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    Genomic context

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    See ATSPS4F in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    14
    Sequence:
    Chromosome: 4; NC_003075.7 (6313914..6320094)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene co-factor for nitrate, reductase and xanthine dehydrogenase 7 Neighboring gene SCR-like 20 Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene uncharacterized protein Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Decrease in leaf sucrose synthesis leads to increased leaf starch turnover and decreased RuBP regeneration-limited photosynthesis but not Rubisco-limited photosynthesis in Arabidopsis null mutants of SPSA1. Sun J, et al. Plant Cell Environ, 2011 Apr. PMID 21309792
    2. Loss of the two major leaf isoforms of sucrose-phosphate synthase in Arabidopsis thaliana limits sucrose synthesis and nocturnal starch degradation but does not alter carbon partitioning during photosynthesis. Volkert K, et al. J Exp Bot, 2014 Oct. PMID 24994761, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036532.3
    NM_001340653.1
    NM_001340654.1
    NM_117080.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables sucrose synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sucrose-phosphate synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables sucrose-phosphate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sucrose-phosphate synthase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sucrose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in sucrose biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Sucrose-phosphate synthase family protein
    NP_001031609.1
    • ATSPS4F; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, sucrose metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose-phosphate synthase (InterPro:IPR006380), Sucrose synthase (InterPro:IPR000368), Sucrose phosphate synthase, plant (InterPro:IPR012819), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose phosphate synthase 3F (TAIR:AT1G04920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_192750.2
    • ATSPS4F; FUNCTIONS IN: sucrose-phosphate synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, sucrose metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose-phosphate synthase (InterPro:IPR006380), Sucrose synthase (InterPro:IPR000368), Sucrose phosphate synthase, plant (InterPro:IPR012819), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose phosphate synthase 3F (TAIR:AT1G04920.1); Has 12483 Blast hits to 12368 proteins in 1939 species: Archae - 509; Bacteria - 8251; Metazoa - 30; Fungi - 116; Plants - 781; Viruses - 0; Other Eukaryotes - 2796 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6313914..6320094
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340652.1 → NP_001329003.1  Sucrose-phosphate synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JLK2, O82624, Q56Z77, Q570L0, Q680C9, Q9SN30
      UniProtKB/TrEMBL
      A0A5S9XQX8, W8QNH3

    2. NM_117080.5 → NP_192750.2  Sucrose-phosphate synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192750.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JLK2, O82624, Q56Z77, Q570L0, Q680C9, Q9SN30
      UniProtKB/TrEMBL
      A0A5S9XQX8, W8QNH3
      Conserved Domains (2) summary
      cd03800
      Location:196 → 690
      GT1_Sucrose_synthase; This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose ...
      TIGR02468
      Location:1 → 1048
      sucrsPsyn_pln; sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant

    3. NM_001340653.1 → NP_001329002.1  Sucrose-phosphate synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B6E2, A0A5S9XQX8

    4. NM_001036532.3 → NP_001031609.1  Sucrose-phosphate synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031609.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JLK2, O82624, Q56Z77, Q570L0, Q680C9, Q9SN30
      UniProtKB/TrEMBL
      A0A5S9XQX8, W8QNH3
      Conserved Domains (2) summary
      cd03800
      Location:196 → 690
      GT1_Sucrose_synthase; This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose ...
      TIGR02468
      Location:1 → 1048
      sucrsPsyn_pln; sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant

    5. NM_001340654.1 → NP_001329004.1  Sucrose-phosphate synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B6D9, A0A5S9XQX8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JLK2.1

    Gene LinkOut

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