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    RLP47 receptor like protein 47 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827015, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RLP47
    Official Full Name
    receptor like protein 47
    Primary source
    TAIR:AT4G13810
    Locus tag
    AT4G13810
    See related
    Araport:AT4G13810
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtRLP47; F18A5.200; F18A5_200; receptor like protein 47
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    Genomic context

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    See RLP47 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (8004549..8007597, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene methionine-tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene magnesium transporter NIPA (DUF803) Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene DNAJ-like 20

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The leucine-rich repeat as a protein recognition motif. Kobe B, et al. Curr Opin Struct Biol, 2001 Dec. PMID 11751054
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001203793.2
    NM_001340886.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within signal transduction IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    receptor like protein 47
    NP_001190722.1
    • receptor like protein 47 (RLP47); INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 48 (TAIR:AT4G13880.1).
    NP_001319924.1
    • receptor like protein 47 (RLP47); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 50 (TAIR:AT4G13920.1); Has 94456 Blast hits to 27387 proteins in 1128 species: Archae - 39; Bacteria - 7351; Metazoa - 18966; Fungi - 1097; Plants - 59830; Viruses - 28; Other Eukaryotes - 7145 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8004549..8007597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340887.1 → NP_001328953.1  receptor like protein 47 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B683

    2. NM_001340886.1 → NP_001319924.1  receptor like protein 47 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JTT5

    3. NM_001203793.2 → NP_001190722.1  receptor like protein 47 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190722.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JTT4, Q9SVN2
      Conserved Domains (4) summary
      cd00116
      Location:263 → 443
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:111 → 134
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:36 → 79
      LRRNT_2; Leucine rich repeat N-terminal domain
      pfam13855
      Location:110 → 169
      LRR_8; Leucine rich repeat
    Nucleotide Protein
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