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    RABA1d RAB GTPase homolog A1D [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827614, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RABA1d
    Official Full Name
    RAB GTPase homolog A1D
    Primary source
    TAIR:AT4G18800
    Locus tag
    AT4G18800
    See related
    Araport:AT4G18800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATHSGBP; ATRAB11B; ATRABA1D; F28A21.210; F28A21_210; RAB GTPase homolog A1D
    Summary
    Encodes RabA1d, a member of the RabA subfamily of small Rab GTPases.
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    Genomic context

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    See RABA1d in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (10319862..10321573, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cellulose synthase family protein Neighboring gene ncRNA Neighboring gene NRAMP metal ion transporter family protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene tRNA-Gly

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Trans-Golgi network localized small GTPase RabA1d is involved in cell plate formation and oscillatory root hair growth. Berson T, et al. BMC Plant Biol, 2014 Sep 27. PMID 25260869, Free PMC Article
    2. Structural sterols are involved in both the initiation and tip growth of root hairs in Arabidopsis thaliana. Ovecka M, et al. Plant Cell, 2010 Sep. PMID 20841426, Free PMC Article
    3. Null mutants of individual RABA genes impact the proportion of different cell wall components in stem tissue of Arabidopsis thaliana. Lunn D, et al. PLoS One, 2013. PMID 24124508, Free PMC Article
    4. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
    5. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_117996.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell wall biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in early endosome membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasmodesma HDA PubMed 
    located_in trans-Golgi network membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RAB GTPase homolog A1D
    NP_193615.1
    • RAB GTPase homolog A1D (RABA1d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1C (TAIR:AT5G45750.1); Has 27980 Blast hits to 27923 proteins in 754 species: Archae - 26; Bacteria - 162; Metazoa - 14618; Fungi - 4214; Plants - 3069; Viruses - 20; Other Eukaryotes - 5871 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      10319862..10321573 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117996.6 → NP_193615.1  RAB GTPase homolog A1D [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193615.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SN35
      UniProtKB/TrEMBL
      A0A178V3A0, A0A5S9XUL2
      Conserved Domains (1) summary
      cd01868
      Location:11 → 175
      Rab11_like; Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SN35.1

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