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    CDS2 cytidinediphosphate diacylglycerol synthase 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828329, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CDS2
    Official Full Name
    cytidinediphosphate diacylglycerol synthase 2
    Primary source
    TAIR:AT4G22340
    Locus tag
    AT4G22340
    See related
    Araport:AT4G22340
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    cytidinediphosphate diacylglycerol synthase 2; T10I14.170; T10I14_170
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    Genomic context

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    See CDS2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Sequence:
    Chromosome: 4; NC_003075.7 (11799852..11803522, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein family (UPF0041) Neighboring gene golgin family A protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene microRNA ath-MIR8176 precursor Neighboring gene Alkaline phytoceramidase (aPHC) Neighboring gene Ubiquitin C-terminal hydrolases superfamily protein Neighboring gene SWIB complex BAF60b domain-containing protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extraplastidial cytidinediphosphate diacylglycerol synthase activity is required for vegetative development in Arabidopsis thaliana. Zhou Y, et al. Plant J, 2013 Sep. PMID 23711240
    2. Two closely related genes of Arabidopsis encode plastidial cytidinediphosphate diacylglycerol synthases essential for photoautotrophic growth. Haselier A, et al. Plant Physiol, 2010 Jul. PMID 20442275, Free PMC Article
    3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036620.2
    NM_118360.3
    NM_202862.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables phosphatidate cytidylyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables phosphatidate cytidylyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidate cytidylyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in CDP-diacylglycerol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within developmental vegetative growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endomembrane system IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum HDA PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    cytidinediphosphate diacylglycerol synthase 2
    NP_001031697.1
    • cytidinediphosphate diacylglycerol synthase 2 (CDS2); FUNCTIONS IN: phosphatidate cytidylyltransferase activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374), Phosphatidate cytidylyltransferase, eukaryota (InterPro:IPR016720); BEST Arabidopsis thaliana protein match is: CDP-diacylglycerol synthase 1 (TAIR:AT1G62430.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_193965.1
    • cytidinediphosphate diacylglycerol synthase 2 (CDS2); FUNCTIONS IN: phosphatidate cytidylyltransferase activity; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374), Phosphatidate cytidylyltransferase, eukaryota (InterPro:IPR016720); BEST Arabidopsis thaliana protein match is: CDP-diacylglycerol synthase 1 (TAIR:AT1G62430.1); Has 7002 Blast hits to 6995 proteins in 2498 species: Archae - 0; Bacteria - 4913; Metazoa - 188; Fungi - 136; Plants - 138; Viruses - 0; Other Eukaryotes - 1627 (source: NCBI BLink).
    NP_974591.1
    • cytidinediphosphate diacylglycerol synthase 2 (CDS2); FUNCTIONS IN: phosphatidate cytidylyltransferase activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: CDP-diacylglycerol synthase 1 (TAIR:AT1G62430.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11799852..11803522 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118360.3 → NP_193965.1  cytidinediphosphate diacylglycerol synthase 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193965.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49639
      UniProtKB/TrEMBL
      A0A178V7Z6, A0A654FRU8
      Conserved Domains (1) summary
      PLN02594
      Location:83 → 422
      PLN02594; phosphatidate cytidylyltransferase

    2. NM_202862.2 → NP_974591.1  cytidinediphosphate diacylglycerol synthase 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974591.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7Z6, F4JL62
      Conserved Domains (1) summary
      PLN02594
      Location:25 → 364
      PLN02594; phosphatidate cytidylyltransferase

    3. NM_001036620.2 → NP_001031697.1  cytidinediphosphate diacylglycerol synthase 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031697.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XVF5, F4JL60
      Conserved Domains (1) summary
      PLN02594
      Location:107 → 446
      PLN02594; phosphatidate cytidylyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O49639.1

    Gene LinkOut

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