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    CORI3 Tyrosine transaminase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828460, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CORI3
    Official Full Name
    Tyrosine transaminase family protein
    Primary source
    TAIR:AT4G23600
    Locus tag
    AT4G23600
    See related
    Araport:AT4G23600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CORONATINE INDUCED 1; F9D16.70; F9D16_70; JASMONIC ACID RESPONSIVE 2; JR2
    Summary
    Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.
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    Genomic context

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    See CORI3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (12310379..12313212)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Tyrosine transaminase family protein Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene ncRNA Neighboring gene Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis CORI3 promoter contains two cis-acting regulatory regions required for transcriptional activity in companion cells. Tsuwamoto R, et al. Plant Cell Rep, 2011 Sep. PMID 21559970
    2. Cloning and characterization of a coronatine-regulated tyrosine aminotransferase from Arabidopsis. Lopukhina A, et al. Plant Physiol, 2001 Aug. PMID 11500565, Free PMC Article
    3. XLG2 and CORI3 function additively to regulate plant defense against the necrotrophic pathogen Sclerotinia sclerotiorum. Tiwari R, et al. Plant J, 2024 Jan. PMID 37910396
    4. Tocopherol content and activities of tyrosine aminotransferase and cystine lyase in Arabidopsis under stress conditions. Holländer-Czytko H, et al. J Plant Physiol, 2005 Jul. PMID 16008101
    5. A new member of plant CS-lyases. A cystine lyase from Arabidopsis thaliana. Jones PR, et al. J Biol Chem, 2003 Mar 21. PMID 12525491

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. XLG2 and CORI3 function additively to regulate plant defense against the necrotrophic pathogen Sclerotinia sclerotiorum.
      Title: XLG2 and CORI3 function additively to regulate plant defense against the necrotrophic pathogen Sclerotinia sclerotiorum.
    2. The CORI3 promoter needs two regions for transcriptional activity in companion cells.
      Title: The Arabidopsis CORI3 promoter contains two cis-acting regulatory regions required for transcriptional activity in companion cells.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036628.2
    NM_118491.3
    NM_179099.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    NOT enables L-alanine:2-oxoglutarate aminotransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    NOT enables L-aspartate:2-oxoglutarate aminotransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    NOT enables L-tryptophan:2-oxoglutarate aminotransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    NOT enables L-tyrosine-2-oxoglutarate transaminase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables cysteine-S-conjugate beta-lyase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transaminase activity NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within amino acid metabolic process IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within hyperosmotic salinity response TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to microbial phytotoxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Tyrosine transaminase family protein
    NP_001031705.2
    • CORONATINE INDUCED 1 (CORI3); FUNCTIONS IN: cystathionine beta-lyase activity, transaminase activity; INVOLVED IN: in 8 processes; LOCATED IN: apoplast, vacuole; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Tyrosine transaminase (InterPro:IPR021178), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT4G23590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_194091.1
    • CORONATINE INDUCED 1 (CORI3); FUNCTIONS IN: cystathionine beta-lyase activity, transaminase activity; INVOLVED IN: in 8 processes; LOCATED IN: apoplast, vacuole; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Tyrosine transaminase (InterPro:IPR021178), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT4G23590.1); Has 36474 Blast hits to 36468 proteins in 2971 species: Archae - 924; Bacteria - 25970; Metazoa - 732; Fungi - 654; Plants - 1240; Viruses - 0; Other Eukaryotes - 6954 (source: NCBI BLink).
    NP_849430.1
    • CORONATINE INDUCED 1 (CORI3); FUNCTIONS IN: cystathionine beta-lyase activity, transaminase activity; INVOLVED IN: in 8 processes; LOCATED IN: apoplast, vacuole; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT4G23590.1); Has 30957 Blast hits to 30951 proteins in 2879 species: Archae - 848; Bacteria - 21516; Metazoa - 657; Fungi - 585; Plants - 1099; Viruses - 0; Other Eukaryotes - 6252 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      12310379..12313212
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118491.3 → NP_194091.1  Tyrosine transaminase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194091.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WN47, Q9SUR6
      UniProtKB/TrEMBL
      A0A178UZM6, A0A5S9XV61, A0A654FS54
      Conserved Domains (1) summary
      TIGR01265
      Location:9 → 409
      tyr_nico_aTase; tyrosine/nicotianamine family aminotransferase

    2. NM_001036628.2 → NP_001031705.2  Tyrosine transaminase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031705.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZM6, F4JP99
      Conserved Domains (2) summary
      cd00609
      Location:51 → 374
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      TIGR01265
      Location:9 → 377
      tyr_nico_aTase; tyrosine/nicotianamine family aminotransferase

    3. NM_179099.3 → NP_849430.1  Tyrosine transaminase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849430.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SUR6
      Conserved Domains (1) summary
      cd00609
      Location:1 → 298
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SUR6.1

    Gene LinkOut

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