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    RNA-binding KH domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828754, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-binding KH domain-containing protein
    Primary source
    TAIR:AT4G26480
    Locus tag
    AT4G26480
    See related
    Araport:AT4G26480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    M3E9.90; M3E9_90
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (13372422..13376332, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene lorelei Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Calcium-binding EF-hand family protein Neighboring gene ncRNA Neighboring gene nicotianamine synthase Neighboring gene methyltransferase small domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001341802.1
    NM_001341803.1
    NM_118781.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding KH domain-containing protein
    NP_001320071.1
    • RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G56140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13372422..13376332 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341802.1 → NP_001320071.1  RNA-binding KH domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65586, Q0WLR1, Q8RWT6
      UniProtKB/TrEMBL
      A0A178V1R2, A0A5S9XWR6, A0A7G2FMY3
      Conserved Domains (2) summary
      pfam16544
      Location:61 → 93
      STAR_dimer; Homodimerization region of STAR domain protein
      cl00098
      Location:159 → 259
      KH-I; K homology (KH) RNA-binding domain, type I

    2. NM_001341803.1 → NP_001329675.1  RNA-binding KH domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B8G6

    3. NM_118781.3 → NP_194378.2  RNA-binding KH domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194378.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65586, Q0WLR1, Q8RWT6
      UniProtKB/TrEMBL
      A0A178V1R2, A0A5S9XWR6, A0A7G2FMY3
      Conserved Domains (2) summary
      pfam16544
      Location:61 → 93
      STAR_dimer; Homodimerization region of STAR domain protein
      cl00098
      Location:159 → 259
      KH-I; K homology (KH) RNA-binding domain, type I
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WLR1.1

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