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    dimethylallyl, adenosine tRNA methylthiotransferase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829475, updated on 18-Sep-2024

    Summary

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    Official Full Name
    dimethylallyl, adenosine tRNA methylthiotransferase
    Primary source
    TAIR:AT4G33380
    Locus tag
    AT4G33380
    See related
    Araport:AT4G33380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17M5.140; F17M5_140
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (16071740..16074994)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827) Neighboring gene Vacuolar import/degradation, Vid27-related protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203974.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 

    General protein information

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    Preferred Names
    dimethylallyl, adenosine tRNA methylthiotransferase
    NP_001190903.1
    • unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube.
    NP_195064.2
    • unknown protein; Has 194 Blast hits to 189 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16071740..16074994
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119492.3 → NP_195064.2  dimethylallyl, adenosine tRNA methylthiotransferase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195064.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V1U4, Q8VZI6, Q9SZB5
      Conserved Domains (1) summary
      pfam14295
      Location:224 → 291
      PAN_4; PAN domain

    2. NM_001203974.1 → NP_001190903.1  dimethylallyl, adenosine tRNA methylthiotransferase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190903.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JIX3
      Conserved Domains (1) summary
      pfam14295
      Location:222 → 289
      PAN_4; PAN domain
    Nucleotide Protein
    Heading Accession and Version

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