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    U-box domain-containing protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824068, updated on 18-Sep-2024

    Summary

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    Official Full Name
    U-box domain-containing protein kinase family protein
    Primary source
    TAIR:AT3G49060
    Locus tag
    AT3G49060
    See related
    Araport:AT3G49060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (18186898..18192145, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box/FBD/LRR protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ATP-binding protein Neighboring gene transmembrane protein, putative (DUF677) Neighboring gene Ribosomal protein S5 domain 2-like superfamily protein Neighboring gene Signal recognition particle, SRP9/SRP14 subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001339396.1
    NM_114765.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    U-box domain-containing protein kinase family protein
    NP_001190037.1
    • U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1).
    NP_566915.1
    • U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1); Has 84033 Blast hits to 83330 proteins in 4034 species: Archae - 70; Bacteria - 7751; Metazoa - 31165; Fungi - 5115; Plants - 29189; Viruses - 207; Other Eukaryotes - 10536 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18186898..18192145 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203108.1 → NP_001190037.1  U-box domain-containing protein kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190037.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VGT3, F4IWQ9
      Conserved Domains (4) summary
      smart00504
      Location:728 → 791
      Ubox; Modified RING finger domain
      cd01989
      Location:16 → 169
      STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
      pfam00069
      Location:473 → 691
      Pkinase; Protein kinase domain
      cl21453
      Location:474 → 703
      PKc_like; Protein Kinases, catalytic domain

    2. NM_114765.3 → NP_566915.1  U-box domain-containing protein kinase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566915.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67YL5, Q67YP5, Q94A51, Q9SMU3
      UniProtKB/TrEMBL
      A0A178VGT3, A0A5S9XJZ8, A0A654FG23
      Conserved Domains (4) summary
      smart00504
      Location:738 → 801
      Ubox; Modified RING finger domain
      cd01989
      Location:16 → 169
      STK_N; The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein ...
      pfam07714
      Location:465 → 710
      Pkinase_Tyr; Protein tyrosine kinase
      cl21453
      Location:466 → 713
      PKc_like; Protein Kinases, catalytic domain

    3. NM_001339396.1 → NP_001326453.1  U-box domain-containing protein kinase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VGT3, A0A1I9LPB5, A0A5S9XJZ8, A0A654FG23
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94A51.1

    Gene LinkOut

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