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    vacuolar protein sorting-associated protein, putative (DUF1162) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824202, updated on 18-Sep-2024

    Summary

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    Official Full Name
    vacuolar protein sorting-associated protein, putative (DUF1162)
    Primary source
    TAIR:AT3G50380
    Locus tag
    AT3G50380
    See related
    Araport:AT3G50380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    37
    Sequence:
    Chromosome: 3; NC_003074.8 (18686368..18700710, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene transcription elongation factor (TFIIS) family protein Neighboring gene miscRNA Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_114898.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein, putative (DUF1162)
    NP_190607.2
    • INVOLVED IN: protein localization; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); Has 365 Blast hits to 355 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 111; Plants - 61; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18686368..18700710 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339467.1 → NP_001326733.1  vacuolar protein sorting-associated protein, putative (DUF1162) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQ66

    2. NM_001339466.1 → NP_001326732.1  vacuolar protein sorting-associated protein, putative (DUF1162) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQ65, A0A654FEK1

    3. NM_001339468.1 → NP_001326734.1  vacuolar protein sorting-associated protein, putative (DUF1162) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQ67, A0A654FEK1

    4. NM_114898.4 → NP_190607.2  vacuolar protein sorting-associated protein, putative (DUF1162) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190607.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J0L9, Q9SND0
      Conserved Domains (2) summary
      pfam06650
      Location:2260 → 2411
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16909
      Location:2653 → 2741
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
    Nucleotide Protein
    Heading Accession and Version

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