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    PIF1 helicase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824332, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PIF1 helicase
    Primary source
    TAIR:AT3G51690
    Locus tag
    AT3G51690
    See related
    Araport:AT3G51690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    DNA helicase homolog PIF1.
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (19176328..19178161, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene PIF1 helicase Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_115028.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PIF1 helicase
    NP_190737.2
    • PIF1 helicase; CONTAINS InterPro DOMAIN/s: DNA helicase PIF1, ATP-dependent (InterPro:IPR010285); BEST Arabidopsis thaliana protein match is: PIF1 helicase (TAIR:AT3G51700.1); Has 995 Blast hits to 991 proteins in 209 species: Archae - 2; Bacteria - 137; Metazoa - 197; Fungi - 108; Plants - 394; Viruses - 3; Other Eukaryotes - 154 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19176328..19178161 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115028.3 → NP_190737.2  PIF1 helicase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190737.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XJX1, A0A654FGQ9, A0MF22, Q45GK3
      Conserved Domains (1) summary
      cl21455
      Location:43 → 213
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
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