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    KCS15 3-ketoacyl-CoA synthase 15 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824381, updated on 18-Sep-2024

    Summary

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    Official Symbol
    KCS15
    Official Full Name
    3-ketoacyl-CoA synthase 15
    Primary source
    TAIR:AT3G52160
    Locus tag
    AT3G52160
    See related
    Araport:AT3G52160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    3-ketoacyl-CoA synthase 15
    Summary
    Encodes KCS15, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
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    Genomic context

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    See KCS15 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (19344972..19346668, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat (TPR)-containing protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene Phosphoglycerate mutase family protein Neighboring gene DNA binding protein Neighboring gene dual specificity protein phosphatase (DsPTP1) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001339560.1
    NM_115076.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables fatty acid elongase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    3-ketoacyl-CoA synthase 15
    NP_190784.1
    • 3-ketoacyl-CoA synthase 15 (KCS15); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: lipid biosynthetic process, fatty acid biosynthetic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 10 (TAIR:AT2G26250.1); Has 4252 Blast hits to 4241 proteins in 1006 species: Archae - 0; Bacteria - 1239; Metazoa - 0; Fungi - 2; Plants - 2897; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19344972..19346668 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115076.4 → NP_190784.1  3-ketoacyl-CoA synthase 15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190784.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFQ2, Q9SUY9
      UniProtKB/TrEMBL
      A0A178VHW8, A0A5S9XKU0, A0MF23
      Conserved Domains (1) summary
      PLN02192
      Location:13 → 449
      PLN02192; 3-ketoacyl-CoA synthase

    2. NM_001339560.1 → NP_001327019.1  3-ketoacyl-CoA synthase 15 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LR12
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SUY9.1

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