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    zinc ion binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824603, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc ion binding protein
    Primary source
    TAIR:AT3G54360
    Locus tag
    AT3G54360
    See related
    Araport:AT3G54360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    NCA1; NO CATALASE ACTIVITY 1
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (20128127..20131968, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene K-box region and MADS-box transcription factor family protein Neighboring gene Forkhead-associated (FHA) domain-containing protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis. Hackenberg T, et al. Plant Cell, 2013 Nov. PMID 24285797, Free PMC Article
    2. A chaperone function of NO CATALASE ACTIVITY1 is required to maintain catalase activity and for multiple stress responses in Arabidopsis. Li J, et al. Plant Cell, 2015 Mar. PMID 25700484, Free PMC Article
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. NCA1 is essential for catalase activity and for multiple stress responses. It has chaperone protein activity that may maintain the folding of catalase in a functional state.[NCA1]
      Title: A chaperone function of NO CATALASE ACTIVITY1 is required to maintain catalase activity and for multiple stress responses in Arabidopsis.
    2. At3g54360 and CAT2 promote autophagy-dependent cell death in Arabidopsis.
      Title: Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_115296.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables enzyme activator activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of programmed cell death IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc ion binding protein
    NP_191004.1
    • zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); Has 748 Blast hits to 691 proteins in 131 species: Archae - 16; Bacteria - 104; Metazoa - 470; Fungi - 16; Plants - 58; Viruses - 8; Other Eukaryotes - 76 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20128127..20131968 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339663.1 → NP_001327012.1  zinc ion binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DI00, Q9M2V1
      UniProtKB/TrEMBL
      A0A178VMR4, A0A5S9XLG1
      Conserved Domains (5) summary
      COG5222
      Location:101 → 197
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00006
      Location:202 → 241
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:245 → 324
      TPR_12; Tetratricopeptide repeat
      cd00162
      Location:108 → 142
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl17238
      Location:106 → 142
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. NM_115296.3 → NP_191004.1  zinc ion binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191004.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DI00, Q9M2V1
      UniProtKB/TrEMBL
      A0A178VMR4, A0A5S9XLG1
      Conserved Domains (5) summary
      COG5222
      Location:101 → 197
      COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00006
      Location:202 → 241
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:245 → 324
      TPR_12; Tetratricopeptide repeat
      cd00162
      Location:108 → 142
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl17238
      Location:106 → 142
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M2V1.1

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