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    Ypt/Rab-GAP domain of gyp1p superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824668, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    Primary source
    TAIR:AT3G55020
    Locus tag
    AT3G55020
    See related
    Araport:AT3G55020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    18
    Sequence:
    Chromosome: 3; NC_003074.8 (20388869..20394987, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene tonneau 1b (TON1b) Neighboring gene phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Neighboring gene phosphatidylglycerolphosphate synthase 2 Neighboring gene glutathione transferase lambda 2 Neighboring gene Protein phosphatase 2C family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001339712.1
    NM_001339713.1
    NM_001339714.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    NP_001319752.1
    • Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G39280.1); Has 8291 Blast hits to 7654 proteins in 526 species: Archae - 15; Bacteria - 632; Metazoa - 4273; Fungi - 1225; Plants - 609; Viruses - 33; Other Eukaryotes - 1504 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20388869..20394987 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339712.1 → NP_001319752.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FGW1, F4JF82

    2. NM_001339714.1 → NP_001326345.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNZ8, A0A654FGW1

    3. NM_001339713.1 → NP_001326346.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LNZ9, A0A654FGW1
    Nucleotide Protein
    Heading Accession and Version

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