U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824732, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ROPGEF6
    Official Full Name
    ROP (rho of plants) guanine nucleotide exchange factor 6
    Primary source
    TAIR:AT3G55660
    Locus tag
    AT3G55660
    See related
    Araport:AT3G55660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATROPGEF6; KINASE PARTNER PROTEIN-LIKE; KPP-LIKE; ROP (rho of plants) guanine nucleotide exchange factor 6
    Summary
    Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ROPGEF6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (20648794..20651484, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene TPRXL Neighboring gene Pyruvate kinase family protein Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene ncRNA Neighboring gene F-box/FBD/LRR protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new family of RhoGEFs activates the Rop molecular switch in plants. Berken A, et al. Nature, 2005 Aug 25. PMID 15980860
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_115424.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ROP (rho of plants) guanine nucleotide exchange factor 6
    NP_191125.1
    • ROP (rho of plants) guanine nucleotide exchange factor 6 (ROPGEF6); FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: ROP guanine nucleotide exchange factor 5 (TAIR:AT5G05940.1); Has 306 Blast hits to 304 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20648794..20651484 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339743.1 → NP_001325478.1  ROP (rho of plants) guanine nucleotide exchange factor 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLC8

    2. NM_115424.3 → NP_191125.1  ROP (rho of plants) guanine nucleotide exchange factor 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191125.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M056
      UniProtKB/TrEMBL
      A0A7G2EUD2
      Conserved Domains (1) summary
      pfam03759
      Location:106 → 468
      PRONE; PRONE (Plant-specific Rop nucleotide exchanger)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M056.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.