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    tRNA-splicing endonuclease subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824903, updated on 18-Sep-2024

    Summary

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    Official Full Name
    tRNA-splicing endonuclease subunit
    Primary source
    TAIR:AT3G57360
    Locus tag
    AT3G57360
    See related
    Araport:AT3G57360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (21225540..21227039)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock amino-terminal domain protein (DUF1977) Neighboring gene ncRNA Neighboring gene Nucleoporin interacting component (Nup93/Nic96-like) family protein Neighboring gene Cyclin family protein Neighboring gene Glycosyltransferase family 61 protein Neighboring gene AGAMOUS-like 18

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_115596.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tRNA-splicing endonuclease subunit
    NP_191295.4
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits to 122 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21225540..21227039
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115596.6 → NP_191295.4  tRNA-splicing endonuclease subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191295.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCV1, A0A384KJC5, Q6DBN3, Q9M2L1
      Conserved Domains (2) summary
      pfam12928
      Location:31 → 92
      tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
      cl40623
      Location:80 → 134
      tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
    Nucleotide Protein
    Heading Accession and Version

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