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    F-box family protein / jacalin lectin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825130, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box family protein / jacalin lectin family protein
    Primary source
    TAIR:AT3G59610
    Locus tag
    AT3G59610
    See related
    Araport:AT3G59610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (22019553..22021308)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene jacalin lectin family protein Neighboring gene RNA polymerase Rpb8 Neighboring gene miscRNA Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene diphthamide synthesis DPH2 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_115823.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    F-box family protein / jacalin lectin family protein
    NP_191520.1
    • F-box family protein / jacalin lectin family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), Mannose-binding lectin (InterPro:IPR001229), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT3G59590.1); Has 2196 Blast hits to 1799 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 2192; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22019553..22021308
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115823.2 → NP_191520.1  F-box family protein / jacalin lectin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191520.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M1A7
      UniProtKB/TrEMBL
      A0A178VLQ1
      Conserved Domains (4) summary
      smart00915
      Location:393 → 519
      Jacalin; Jacalin-like lectin domain
      pfam07734
      Location:189 → 356
      FBA_1; F-box associated
      TIGR01640
      Location:96 → 329
      F_box_assoc_1; F-box protein interaction domain
      pfam00646
      Location:7 → 49
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M1A7.1

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