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    DL1B DYNAMIN-like 1B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825349, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DL1B
    Official Full Name
    DYNAMIN-like 1B
    Primary source
    TAIR:AT3G61760
    Locus tag
    AT3G61760
    See related
    Araport:AT3G61760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ADL1B; DYNAMIN-like 1B; F21F14.15
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    Genomic context

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    See DL1B in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Sequence:
    Chromosome: 3; NC_003074.8 (22860298..22864229, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein Neighboring gene tRNA-Ala Neighboring gene Acid phosphatase/vanadium-dependent haloperoxidase-related protein Neighboring gene embryo defective 1703

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis SHORT INTEGUMENTS 2 is a mitochondrial DAR GTPase. Hill TA, et al. Genetics, 2006 Oct. PMID 16849600, Free PMC Article
    2. Arabidopsis dynamin-related protein DRP2B is co-localized with DRP1A on the leading edge of the forming cell plate. Fujimoto M, et al. Plant Cell Rep, 2008 Oct. PMID 18612642
    3. Interactome of the plant-specific ESCRT-III component AtVPS2.2 in Arabidopsis thaliana. Ibl V, et al. J Proteome Res, 2012 Jan 1. PMID 22010978, Free PMC Article
    4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001340126.1
    NM_001340127.1
    NM_116041.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoskeleton IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in phragmoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DYNAMIN-like 1B
    NP_191735.2
    • DYNAMIN-like 1B (DL1B); FUNCTIONS IN: GTP binding, GTPase activity; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin, GTPase region, conserved site (InterPro:IPR019762), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: dynamin-like protein (TAIR:AT5G42080.1); Has 2850 Blast hits to 2733 proteins in 320 species: Archae - 2; Bacteria - 48; Metazoa - 1057; Fungi - 814; Plants - 580; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22860298..22864229 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116041.3 → NP_191735.2  DYNAMIN-like 1B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191735.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84XF3, Q9M362
      UniProtKB/TrEMBL
      A0A178VE87, A0A5S9XMV9, A0A654FJX1
      Conserved Domains (3) summary
      smart00302
      Location:513 → 606
      GED; Dynamin GTPase effector domain
      cd08771
      Location:33 → 300
      DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
      pfam01031
      Location:222 → 500
      Dynamin_M; Dynamin central region

    2. NM_001340126.1 → NP_001325984.1  DYNAMIN-like 1B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LMW6, A0A5S9XMV9, A0A654FJX1

    3. NM_001340127.1 → NP_001325985.1  DYNAMIN-like 1B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LMW7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84XF3.1

    Gene LinkOut

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