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    SQD2 sulfoquinovosyldiacylglycerol 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831888, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SQD2
    Official Full Name
    sulfoquinovosyldiacylglycerol 2
    Primary source
    TAIR:AT5G01220
    Locus tag
    AT5G01220
    See related
    Araport:AT5G01220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7J8.200; F7J8_200; SULFOLIPID SYNTHASE; sulfoquinovosyldiacylglycerol 2
    Summary
    involved in sulfolipid biosynthesis
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    Genomic context

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    See SQD2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (86543..90117, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene ncRNA Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene josephin-like protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis disrupted in SQD2 encoding sulfolipid synthase is impaired in phosphate-limited growth. Yu B, et al. Proc Natl Acad Sci U S A, 2002 Apr 16. PMID 11960029, Free PMC Article
    2. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
    3. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_120200.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables UDP-glycosyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to phosphate starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to phosphate starvation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within glycolipid biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in sulfolipid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within sulfolipid biosynthetic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    sulfoquinovosyldiacylglycerol 2
    NP_568085.2
    • sulfoquinovosyldiacylglycerol 2 (SQD2); FUNCTIONS IN: UDP-glycosyltransferase activity, UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: cellular response to phosphate starvation, sulfolipid biosynthetic process, glycolipid biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT5G59070.1); Has 35941 Blast hits to 35876 proteins in 3155 species: Archae - 1250; Bacteria - 26211; Metazoa - 142; Fungi - 236; Plants - 1690; Viruses - 2; Other Eukaryotes - 6410 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      86543..90117 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342579.1 → NP_001331107.1  sulfoquinovosyldiacylglycerol 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BCW3, A0A5S9Y2J7, A0A654FX94

    2. NM_120200.4 → NP_568085.2  sulfoquinovosyldiacylglycerol 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568085.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8S4F6, Q941K9, Q9LFB4
      UniProtKB/TrEMBL
      A0A5S9Y2J7, A0A654FX94
      Conserved Domains (2) summary
      cd03814
      Location:105 → 468
      GT1_like_2; This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can ...
      PLN02871
      Location:46 → 510
      PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S4F6.1

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