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    chaperone protein dnaJ-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830500, updated on 18-Sep-2024

    Summary

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    Official Full Name
    chaperone protein dnaJ-like protein
    Primary source
    TAIR:AT5G06130
    Locus tag
    AT5G06130
    See related
    Araport:AT5G06130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K16F4.10; K16F4_10
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (1853432..1855978, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DnaJ and myb-like DNA-binding domain-containing protein Neighboring gene ARM repeat superfamily protein Neighboring gene tRNA-Leu Neighboring gene sorting nexin 1 Neighboring gene Cyclin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis OR proteins are the major posttranscriptional regulators of phytoene synthase in controlling carotenoid biosynthesis. Zhou X, et al. Proc Natl Acad Sci U S A, 2015 Mar 17. PMID 25675505, Free PMC Article
    2. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_120695.5
    NM_180700.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of carotenoid biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within protein stabilization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    chaperone protein dnaJ-like protein
    NP_196231.2
    • chaperone protein dnaJ-related; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61670.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_851031.2
    • chaperone protein dnaJ-related; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61670.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1853432..1855978 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120695.5 → NP_196231.2  chaperone protein dnaJ-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196231.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYD8, Q9LHS3
      UniProtKB/TrEMBL
      A0A178UJC5, A0A5S9Y1T7, A0A654FYT9
      Conserved Domains (1) summary
      cl21539
      Location:215 → 311
      DnaJ_zf; Zinc finger domain of DnaJ and HSP40

    2. NM_180700.3 → NP_851031.2  chaperone protein dnaJ-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851031.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y1T7, A0A654FYT9, F4K2C6
      Conserved Domains (1) summary
      cl21539
      Location:131 → 227
      DnaJ_zf; Zinc finger domain of DnaJ and HSP40
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYD8.1

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