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    plant/protein (Protein of unknown function, DUF599) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830923, updated on 18-Sep-2024

    Summary

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    Official Full Name
    plant/protein (Protein of unknown function, DUF599)
    Primary source
    TAIR:AT5G10580
    Locus tag
    AT5G10580
    See related
    Araport:AT5G10580
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12B17.70; F12B17_70
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (3347381..3350071)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene methyltransferase Neighboring gene cytochrome P450, family 81, subfamily K, polypeptide 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_121096.3
    NM_203033.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    plant/protein (Protein of unknown function, DUF599)
    NP_196620.1
    • Protein of unknown function, DUF599; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF599 (TAIR:AT4G31330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_974762.1
    • Protein of unknown function, DUF599; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF599 (InterPro:IPR006747); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF599 (TAIR:AT4G31330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3347381..3350071
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343121.1 → NP_001330293.1  plant/protein (Protein of unknown function, DUF599) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMW4, A0A1P8BAB6, A0A5S9Y314

    2. NM_001343122.1 → NP_001330292.1  plant/protein (Protein of unknown function, DUF599) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMW4, A0A5S9Y314, A0A654FZZ3, Q9LXB0
      Conserved Domains (1) summary
      pfam04654
      Location:11 → 224
      DUF599; Protein of unknown function, DUF599

    3. NM_121096.3 → NP_196620.1  plant/protein (Protein of unknown function, DUF599) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196620.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMW4, A0A5S9Y314, A0A654FZZ3, Q9LXB0
      Conserved Domains (1) summary
      pfam04654
      Location:11 → 224
      DUF599; Protein of unknown function, DUF599

    4. NM_203033.1 → NP_974762.1  plant/protein (Protein of unknown function, DUF599) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974762.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KI75
      Conserved Domains (1) summary
      pfam04654
      Location:11 → 185
      DUF599; Protein of unknown function, DUF599
    Nucleotide Protein
    Heading Accession and Version

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