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    MD-2-related lipid recognition domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832449, updated on 18-Sep-2024

    Summary

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    Official Full Name
    MD-2-related lipid recognition domain-containing protein
    Primary source
    TAIR:AT5G23840
    Locus tag
    AT5G23840
    See related
    Araport:AT5G23840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MRO11.12; MRO11_12
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (8035690..8037110)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene MD-2-related lipid recognition domain-containing protein Neighboring gene MD-2-related lipid recognition domain-containing protein Neighboring gene O-glucosyltransferase rumi-like protein (DUF821) Neighboring gene tubulin beta 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_122289.3
    NM_203096.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    MD-2-related lipid recognition domain-containing protein
    NP_197773.1
    • MD-2-related lipid recognition domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein (TAIR:AT5G23820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_974825.1
    • MD-2-related lipid recognition domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein (TAIR:AT5G23820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8035690..8037110
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122289.3 → NP_197773.1  MD-2-related lipid recognition domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197773.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UT10, A0A654G3U7, Q9FF96
      Conserved Domains (1) summary
      cl00274
      Location:28 → 154
      ML; The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of ...

    2. NM_203096.1 → NP_974825.1  MD-2-related lipid recognition domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974825.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KEB4
      Conserved Domains (1) summary
      cl00274
      Location:28 → 120
      ML; The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of ...
    Nucleotide Protein
    Heading Accession and Version

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