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    TRM10 tRNA (guanine(9)-N1)-methyltransferase-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834819, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRM10
    Official Full Name
    tRNA (guanine(9)-N1)-methyltransferase-like protein
    Primary source
    TAIR:AT5G47680
    Locus tag
    AT5G47680
    See related
    Araport:AT5G47680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtTRM; MNJ7.27; MNJ7_27; tRNA modification 10
    Summary
    Encodes a protein involved in modification of nucleosides in tRNA. Mutants have 50% less 1-methylguanosine than wt counterparts.
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    Genomic context

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    See TRM10 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (19316046..19317539, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nuclear factor Y, subunit B2 Neighboring gene nudix hydrolase homolog 2 Neighboring gene Homeodomain-like superfamily protein Neighboring gene nuclear factor Y, subunit B6 Neighboring gene binding protein Neighboring gene 60S acidic ribosomal protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transfer RNA modifications and genes for modifying enzymes in Arabidopsis thaliana. Chen P, et al. BMC Plant Biol, 2010 Sep 14. PMID 20836892, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_124142.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables tRNA (guanosine(9)-N1)-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within 1-methylguanosine metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within tRNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tRNA (guanine(9)-N1)-methyltransferase-like protein
    NP_199579.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19316046..19317539 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124142.5 → NP_199579.1  tRNA (guanine(9)-N1)-methyltransferase-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199579.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UF69, A0A5S9YBW6, A0A654G8X0, Q9FGI9
      Conserved Domains (1) summary
      cd18089
      Location:118 → 288
      SPOUT_Trm10-like; tRNA methyltransferase Trm10-like
    Nucleotide Protein
    Heading Accession and Version

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