U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    EMB3142 nuclear pore complex protein (DUF3414) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835195, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    EMB3142
    Official Full Name
    nuclear pore complex protein (DUF3414)
    Primary source
    TAIR:AT5G51200
    Locus tag
    AT5G51200
    See related
    Araport:AT5G51200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    EMBRYO DEFECTIVE 3142; MWD22.15; MWD22_15
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EMB3142 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    45
    Sequence:
    Chromosome: 5; NC_003076.8 (20804715..20819629)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene Ta11-like non-LTR retrotransposon Neighboring gene ubiquinol-cytochrome C chaperone family protein Neighboring gene oleosin3

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Bacterial Infection Disrupts Clock Gene Expression to Attenuate Immune Responses. de Leone MJ, et al. Curr Biol, 2020 May 4. PMID 32220315
    2. Characterization of Arabidopsis enhanced disease susceptibility mutants that are affected in systemically induced resistance. Ton J, et al. Plant J, 2002 Jan. PMID 12060223
    3. Isolation of Arabidopsis mutants with enhanced disease susceptibility by direct screening. Glazebrook J, et al. Genetics, 1996 Jun. PMID 8725243, Free PMC Article
    4. Arabidopsis thaliana EDS4 contributes to salicylic acid (SA)-dependent expression of defense responses: evidence for inhibition of jasmonic acid signaling by SA. Gupta V, et al. Mol Plant Microbe Interact, 2000 May. PMID 10796016
    5. bHLH05 is an interaction partner of MYB51 and a novel regulator of glucosinolate biosynthesis in Arabidopsis. Frerigmann H, et al. Plant Physiol, 2014 Sep. PMID 25049362, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001344925.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within circadian regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within induced systemic resistance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within systemic acquired resistance, salicylic acid mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    nuclear pore complex protein (DUF3414)
    NP_001318776.1
    • Protein of unknown function (DUF3414); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3414 (InterPro:IPR021827); Has 203 Blast hits to 190 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 18; Plants - 55; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20804715..20819629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344926.1 → NP_001332447.1  nuclear pore complex protein (DUF3414) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGZ1, A0A5S9YCW7
      Conserved Domains (1) summary
      cl29134
      Location:387 → 1475
      Nup188; Nucleoporin subcomplex protein binding to Pom34

    2. NM_001344927.1 → NP_001332446.1  nuclear pore complex protein (DUF3414) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGY9, A0A654GA51

    3. NM_001344925.1 → NP_001318776.1  nuclear pore complex protein (DUF3414) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KBW6, Q9LU53
      UniProtKB/TrEMBL
      A0A2H1ZE90
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.