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    OPT1 oligopeptide transporter 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835691, updated on 18-Sep-2024

    Summary

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    Official Symbol
    OPT1
    Official Full Name
    oligopeptide transporter 1
    Primary source
    TAIR:AT5G55930
    Locus tag
    AT5G55930
    See related
    Araport:AT5G55930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1; ATOPT1; MYN21.4; MYN21_4; oligopeptide transporter 1
    Summary
    oligopeptide transporter
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    Genomic context

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    See OPT1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (22652715..22656106)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Sucrase/ferredoxin-like family protein Neighboring gene D6 protein kinase Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ncRNA Neighboring gene Uncharacterized protein family (UPF0172) Neighboring gene Nucleotide/sugar transporter family protein Neighboring gene transmembrane protein C9orf5 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An oligopeptide transporter gene family in Arabidopsis. Koh S, et al. Plant Physiol, 2002 Jan. PMID 11788749, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124975.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables oligopeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oligopeptide transmembrane transporter activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables oligopeptide transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within oligopeptide transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oligopeptide transporter 1
    NP_200404.1
    • oligopeptide transporter 1 (OPT1); CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 5 (TAIR:AT4G26590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22652715..22656106
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124975.4 → NP_200404.1  oligopeptide transporter 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200404.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FG72
      UniProtKB/TrEMBL
      A0A178U991, A0A5S9YEX8, A0A654GBM2
      Conserved Domains (1) summary
      TIGR00728
      Location:37 → 718
      OPT_sfam; oligopeptide transporter, OPT superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FG72.1

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