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    CHY-type/CTCHY-type/RING-type Zinc finger protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832631, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CHY-type/CTCHY-type/RING-type Zinc finger protein
    Primary source
    TAIR:AT5G25560
    Locus tag
    AT5G25560
    See related
    Araport:AT5G25560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T14C9.100; T14C9_100
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (8897797..8901740)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CTC-interacting domain 6 Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene polyamine-modulated factor 1-binding protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ubiquitin E3 ligase AtCHYR2 functions in glucose regulation of germination and post-germinative growth in Arabidopsis thaliana. Wang S, et al. Plant Cell Rep, 2023 Jun. PMID 36991149
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203468.2
    NM_001343939.1
    NM_001343940.1
    NM_001343942.1
    NM_122467.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in glucose mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CHY-type/CTCHY-type/RING-type Zinc finger protein
    NP_001190397.1
    • CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G22920.1).
    NP_001318649.1
    • CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G22920.1); Has 943 Blast hits to 942 proteins in 169 species: Archae - 2; Bacteria - 0; Metazoa - 357; Fungi - 128; Plants - 310; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
    NP_001318650.1
    • CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G22920.1).
    NP_197938.2
    • CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G22920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8897797..8901740
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343941.1 → NP_001331056.1  CHY-type/CTCHY-type/RING-type Zinc finger protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8I2, A0A384KEZ3, A0A5S9Y750, A8MQ89, F4JY60
      Conserved Domains (4) summary
      cd00162
      Location:199 → 241
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam05495
      Location:63 → 145
      zf-CHY; CHY zinc finger
      pfam14599
      Location:246 → 304
      zinc_ribbon_6; Zinc-ribbon
      cl17238
      Location:198 → 242
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. NM_001203468.2 → NP_001190397.1  CHY-type/CTCHY-type/RING-type Zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190397.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y750, F4JY61
      Conserved Domains (4) summary
      cd00162
      Location:194 → 236
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam05495
      Location:61 → 140
      zf-CHY; CHY zinc finger
      pfam14599
      Location:241 → 299
      zinc_ribbon_6; Zinc-ribbon
      cl17238
      Location:193 → 237
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    3. NM_001343939.1 → NP_001318649.1  CHY-type/CTCHY-type/RING-type Zinc finger protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8I2, A0A384KEZ3, A0A5S9Y750, A8MQ89, F4JY60
      Conserved Domains (4) summary
      cd00162
      Location:199 → 241
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam05495
      Location:63 → 145
      zf-CHY; CHY zinc finger
      pfam14599
      Location:246 → 304
      zinc_ribbon_6; Zinc-ribbon
      cl17238
      Location:198 → 242
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    4. NM_122467.5 → NP_197938.2  CHY-type/CTCHY-type/RING-type Zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197938.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8I2, A0A384KEZ3, A0A5S9Y750, A8MQ89, F4JY60
      Conserved Domains (4) summary
      cd00162
      Location:199 → 241
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam05495
      Location:63 → 145
      zf-CHY; CHY zinc finger
      pfam14599
      Location:246 → 304
      zinc_ribbon_6; Zinc-ribbon
      cl17238
      Location:198 → 242
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    5. NM_001343942.1 → NP_001331055.1  CHY-type/CTCHY-type/RING-type Zinc finger protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178U8I2, A0A384KEZ3, A0A5S9Y750, A8MQ89, F4JY60
      Conserved Domains (4) summary
      cd00162
      Location:199 → 241
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      pfam05495
      Location:63 → 145
      zf-CHY; CHY zinc finger
      pfam14599
      Location:246 → 304
      zinc_ribbon_6; Zinc-ribbon
      cl17238
      Location:198 → 242
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    6. NM_001343940.1 → NP_001318650.1  CHY-type/CTCHY-type/RING-type Zinc finger protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y750, F4JY59
    Nucleotide Protein
    Heading Accession and Version

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