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    caldesmon-like protein (Protein of unknown function, DUF593) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831534, updated on 18-Sep-2024

    Summary

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    Official Full Name
    caldesmon-like protein (Protein of unknown function, DUF593)
    Primary source
    TAIR:AT5G16720
    Locus tag
    AT5G16720
    See related
    Araport:AT5G16720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5E19.60; F5E19_60; MyoB3; myosin binding protein 3
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (5494228..5496846)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene dehydroascorbate reductase 1 Neighboring gene protein EMBRYO DEFECTIVE 2247 Neighboring gene weak chloroplast movement under blue light protein (DUF827) Neighboring gene Transmembrane amino acid transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Lipid droplets in Arabidopsis thaliana leaves contain myosin-binding proteins and enzymes associated with furan-containing fatty acid biosynthesis. Omata Y, et al. Front Plant Sci, 2024. PMID 38495375, Free PMC Article
    2. Identification of myosin XI receptors in Arabidopsis defines a distinct class of transport vesicles. Peremyslov VV, et al. Plant Cell, 2013 Aug. PMID 23995081, Free PMC Article
    3. Myosin-driven transport network in plants. Kurth EG, et al. Proc Natl Acad Sci U S A, 2017 Feb 21. PMID 28096376, Free PMC Article
    4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_121678.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables myosin XI tail binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables myosin binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in lipid droplet IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caldesmon-like protein (Protein of unknown function, DUF593)
    NP_197174.2
    • Protein of unknown function, DUF593; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT1G70750.1); Has 18197 Blast hits to 13174 proteins in 981 species: Archae - 171; Bacteria - 1369; Metazoa - 9112; Fungi - 1364; Plants - 1043; Viruses - 91; Other Eukaryotes - 5047 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5494228..5496846
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121678.3 → NP_197174.2  caldesmon-like protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197174.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WNW4, Q9LFE5
      UniProtKB/TrEMBL
      A0A178UCL7, A0A654G1M3
      Conserved Domains (2) summary
      pfam17380
      Location:358 → 640
      DUF5401; Family of unknown function (DUF5401)
      pfam04576
      Location:358 → 449
      Zein-binding
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0WNW4.1

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