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    carbon-sulfur lyase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831557, updated on 18-Sep-2024

    Summary

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    Official Full Name
    carbon-sulfur lyase
    Primary source
    TAIR:AT5G16940
    Locus tag
    AT5G16940
    See related
    Araport:AT5G16940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2K13.90; F2K13_90
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (5571550..5572405, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cellulose-synthase like D2 Neighboring gene Fasciclin-like arabinogalactan family protein Neighboring gene AAA-type ATPase family protein Neighboring gene krueppel-like factor Neighboring gene ncRNA Neighboring gene Zinc-binding dehydrogenase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001161242.1
    NM_121700.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbon-sulfur lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    carbon-sulfur lyase
    NP_001154714.1
    • carbon-sulfur lyases; FUNCTIONS IN: carbon-sulfur lyase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione-dependent formaldehyde-activating, GFA (InterPro:IPR006913); Has 2298 Blast hits to 2296 proteins in 492 species: Archae - 0; Bacteria - 969; Metazoa - 67; Fungi - 56; Plants - 42; Viruses - 0; Other Eukaryotes - 1164 (source: NCBI BLink).
    NP_197196.1
    • carbon-sulfur lyases; FUNCTIONS IN: carbon-sulfur lyase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutathione-dependent formaldehyde-activating, GFA (InterPro:IPR006913); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5571550..5572405 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121700.5 → NP_197196.1  carbon-sulfur lyase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197196.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UCD0, A0A5S9Y537, Q9LFK7
      Conserved Domains (1) summary
      cl01553
      Location:8 → 102
      GFA; Glutathione-dependent formaldehyde-activating enzyme

    2. NM_001161242.1 → NP_001154714.1  carbon-sulfur lyase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154714.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UCD0, A0A5S9Y537, Q9LFK7
      Conserved Domains (1) summary
      cl01553
      Location:8 → 102
      GFA; Glutathione-dependent formaldehyde-activating enzyme
    Nucleotide Protein
    Heading Accession and Version

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