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    BPA1 binding partner of acd11 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831547, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BPA1
    Official Full Name
    binding partner of acd11 1
    Primary source
    TAIR:AT5G16840
    Locus tag
    AT5G16840
    See related
    Araport:AT5G16840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    binding partner of acd11 1; F5E19.180; F5E19_180
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    Genomic context

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    See BPA1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (5535845..5538250)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene heat shock factor 3 Neighboring gene syntaxin of plants 21 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene telomerase reverse transcriptase Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Peptidyl-tRNA hydrolase II (PTH2) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of proteins interacting with Arabidopsis ACD11. Petersen NH, et al. J Plant Physiol, 2009 Apr 1. PMID 18845362
    2. A Phytophthora capsici Effector Targets ACD11 Binding Partners that Regulate ROS-Mediated Defense Response in Arabidopsis. Li Q, et al. Mol Plant, 2019 Apr 1. PMID 30703564
    3. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
    4. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    5. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001085126.1
    NM_001085127.1
    NM_121690.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within negative regulation of plant-type hypersensitive response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    binding partner of acd11 1
    NP_001078595.1
    • binding partner of acd11 1 (BPA1); FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 439 Blast hits to 439 proteins in 94 species: Archae - 0; Bacteria - 4; Metazoa - 20; Fungi - 117; Plants - 286; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
    NP_001078596.1
    • binding partner of acd11 1 (BPA1); FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 470 Blast hits to 470 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 113; Plants - 311; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
    NP_197186.1
    • binding partner of acd11 1 (BPA1); FUNCTIONS IN: oxidoreductase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5535845..5538250
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121690.4 → NP_197186.1  binding partner of acd11 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197186.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQX8, A8MSB5, C0Z220, Q93Z43, Q9LFD5
      UniProtKB/TrEMBL
      A0A178URR7, A0A5S9Y528, Q8LB67
      Conserved Domains (1) summary
      PLN03120
      Location:2 → 258
      PLN03120; nucleic acid binding protein; Provisional

    2. NM_001085126.1 → NP_001078595.1  binding partner of acd11 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078595.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8LB67
      Conserved Domains (2) summary
      PLN03120
      Location:2 → 259
      PLN03120; nucleic acid binding protein; Provisional
      cl17169
      Location:7 → 225
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. NM_001085127.1 → NP_001078596.1  binding partner of acd11 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078596.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8LB67
      Conserved Domains (2) summary
      PLN03120
      Location:1 → 256
      PLN03120; nucleic acid binding protein; Provisional
      cl17169
      Location:5 → 222
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LFD5.1

    Gene LinkOut

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