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    Per1-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838226, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Per1-like family protein
    Primary source
    TAIR:AT1G16560
    Locus tag
    AT1G16560
    See related
    Araport:AT1G16560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19K19.12; F19K19_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (5668384..5670708)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene molybdenum cofactor sulfurase (LOS5) (ABA3) Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene DNA-binding HORMA family protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of Arabidopsis Post-Glycosylphosphatidylinositol Attachment to Proteins Phospholipase 3 Like Genes. Bernat-Silvestre C, et al. Front Plant Sci, 2022. PMID 35222477, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035981.1
    NM_001332232.1
    NM_001332233.1
    NM_001332234.1
    NM_001332235.1
    NM_001332236.1
    NM_101520.3
    NM_202113.2
    NM_202114.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Per1-like family protein
    NP_001031058.1
    • Per1-like family protein; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001319020.1
    • Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1); Has 343 Blast hits to 337 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 158; Plants - 79; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_973842.1
    • Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_973843.1
    • Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT5G62130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5668384..5670708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202113.2 → NP_973842.1  Per1-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973842.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9US11, A0A654EAJ2, Q9FX73
      Conserved Domains (1) summary
      pfam04080
      Location:66 → 326
      Per1; Per1-like

    2. NM_202114.2 → NP_973843.1  Per1-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973843.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9US11, A0A654EAJ2, Q9FX73
      Conserved Domains (1) summary
      pfam04080
      Location:66 → 326
      Per1; Per1-like

    3. NM_001332234.1 → NP_001323040.1  Per1-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9US11, A0A654EAJ2, Q9FX73
      Conserved Domains (1) summary
      pfam04080
      Location:66 → 326
      Per1; Per1-like

    4. NM_001332235.1 → NP_001323041.1  Per1-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9US11, A0A654EAJ2, Q9FX73
      Conserved Domains (1) summary
      pfam04080
      Location:66 → 326
      Per1; Per1-like

    5. NM_001332233.1 → NP_001323039.1  Per1-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9US11, A0A654EAJ2, Q9FX73
      Conserved Domains (1) summary
      pfam04080
      Location:66 → 326
      Per1; Per1-like

    6. NM_001332236.1 → NP_001323042.1  Per1-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9US11, A0A654EAJ2, Q9FX73
      Conserved Domains (1) summary
      pfam04080
      Location:66 → 326
      Per1; Per1-like

    7. NM_001332232.1 → NP_001319020.1  Per1-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9US11, A0A654EAJ2, Q9FX73
      Conserved Domains (1) summary
      pfam04080
      Location:66 → 326
      Per1; Per1-like

    8. NM_001035981.1 → NP_001031058.1  Per1-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031058.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4I4H2
      Conserved Domains (1) summary
      pfam04080
      Location:61 → 271
      Per1; Per1-like

    9. NM_101520.3 → NP_173104.1  Per1-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173104.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9US11, A0A654EAJ2, Q9FX73
      Conserved Domains (1) summary
      pfam04080
      Location:66 → 326
      Per1; Per1-like
    Nucleotide Protein
    Heading Accession and Version

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