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    heme oxygenase-like, multi-helical [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833206, updated on 18-Sep-2024

    Summary

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    Official Full Name
    heme oxygenase-like, multi-helical
    Primary source
    TAIR:AT5G32470
    Locus tag
    AT5G32470
    See related
    Araport:AT5G32470
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18O9.80; F18O9_80
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (12084897..12088706, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RNA binding (RRM/RBD/RNP motifs) family protein Neighboring gene Transcriptional factor B3 family protein Neighboring gene miscRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis thiamin-deficient mutant pale green1 lacks thiamin monophosphate phosphatase of the vitamin B(1) biosynthesis pathway. Hsieh WY, et al. Plant J, 2017 Jul. PMID 28346710
    2. Thiamine mutants of the crucifer, Arabidopsis. Li SL, et al. Biochem Genet, 1969 Apr. PMID 5364924
    3. Arabidopsis TH2 Encodes the Orphan Enzyme Thiamin Monophosphate Phosphatase. Mimura M, et al. Plant Cell, 2016 Oct. PMID 27677881, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_122826.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables thiaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables thiamine phosphate phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within thiamine biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heme oxygenase-like, multi-helical
    NP_198287.3
    • Haem oxygenase-like, multi-helical; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084), TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C (InterPro:IPR004305); Has 1988 Blast hits to 1985 proteins in 797 species: Archae - 79; Bacteria - 1526; Metazoa - 2; Fungi - 151; Plants - 51; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      12084897..12088706 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122826.5 → NP_198287.3  heme oxygenase-like, multi-helical [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198287.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KFT7, Q0WLK4, Q0WQD9
      UniProtKB/TrEMBL
      A0A178UHC4, A0A5S9Y8N7
      Conserved Domains (1) summary
      cd19368
      Location:66 → 292
      TenA_C_AtTH2-like; TenA_C family similar to the N-terminal TenA_C domain of Arabidopsis thaliana thiamine requiring 2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4KFT7.1

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