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    F-box associated ubiquitination effector family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841119, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box associated ubiquitination effector family protein
    Primary source
    TAIR:AT1G46912
    Locus tag
    AT1G46912
    See related
    Araport:AT1G46912
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2G19.20; F2G19_20
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (17272521..17273629)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene F-box family protein Neighboring gene F-box family protein Neighboring gene VIER F-box protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box associated ubiquitination effector family protein
    NP_001185158.1
    • F-box associated ubiquitination effector family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box associated domain, type 3 (InterPro:IPR013187), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G46840.1).
    NP_175149.1
    • F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G46840.1); Has 785 Blast hits to 764 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 785; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17272521..17273629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001198229.1 → NP_001185158.1  F-box associated ubiquitination effector family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001185158.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DYQ9, F4HRE9
      Conserved Domains (2) summary
      smart00256
      Location:40 → 74
      FBOX; A Receptor for Ubiquitination Targets
      cl23987
      Location:110 → 176
      FBA_1; F-box associated

    2. NM_103609.1 → NP_175149.1  F-box associated ubiquitination effector family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175149.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EG65, Q9C628
      Conserved Domains (1) summary
      pfam08268
      Location:146 → 268
      FBA_3; F-box associated domain
    Nucleotide Protein
    Heading Accession and Version

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